Publikacje - Instytut Biochemii i Biofizyki Polskiej Akademii Nauk

STOKOWA-SOŁTYS K., SZCZERBA K., PACEWICZ M., WIECZOREK R., WEZYNFELD N.E., BAL W., Interactions of neurokinin B with copper(II) ions and their potential biological consequences. Dalton Transactions (2022) 51: 14267-14276 DOI: 10.1039/d2dt02033e IF 4.569 (2021)

GRABOWSKI Ł., WĘGRZYN G., WĘGRZYN A., PODLACHA M., Highly different effects of phage therapy and antibiotic therapy on immunological responses of chickens infected with Salmonella enterica serovar Typhimurium. Frontiers in Immunology (2022) 13: 956833 (16 p.) DOI: 10.3389/fimmu.2022.956833 IF 8.786 (2021)

FUDALA K., BIALIK R.J., Seals from outer space - Population census of southern elephant seals using VHR satellite imagery. Remote Sensing Applications-Society and Environment (2022) 28: 100836 (7 p.) DOI: 10.1016/j.rsase.2022.100836 IF -

JARNOT P., ZIEMSKA-LEGIECKA J., GRYNBERG M., GRUCA A., Insights from analyses of low complexity regions with canonical methods for protein sequence comparison. Briefings in Bioinformatics (2022) 23(5): bbac299 (13 p.) DOI: 10.1093/bib/bbac299 IF 13.994 (2021)

GÖÇ Y.B., POZIEMSKI J., SMOLIŃSKA W., SUWAŁA D., WIECZOREK G., NIEDZIAŁEK D., Tracking Topological and Electronic Effects on the Folding and Stability of Guanine-Deficient RNA G-Quadruplexes, Engineered with a New Computational Tool for De Novo Quadruplex Folding. International Journal of Molecular Sciences (2022) 23(19): 10990 (24 p.) DOI: 10.3390/ijms231910990 IF 6.208 (2021)

AKIMNIYAZOVA A., YURIKOVA O., PYRKOVA A., RAKHMETULLINA A., NIYAZOVA T., RYSKULOVA A-G., IVASHCHENKO A., In Silico Study of piRNA Interactions with the SARS-CoV-2 Genome. International Journal of Molecular Sciences (2022) 23(17): 9919 (9 p.) DOI: 10.3390/ijms23179919 IF 6.208 (2021)

RAVICHANDRAN M., RAFALSKI D., DAVIES C.I., ORTEGA-RECALDE O., NAN X., GLANFIELD C.R., KOTTER A., MISZTAL K., WANG A.H., WOJCIECHOWSKI M., RAŻEW M., MAYYAS I.M., KARDAILSKY O., SCHWARTZ U., ZEMBRZYCKI K., MORISON I.M.,HELM M., WEICHENHAN D., JURKOWSKA R.Z., KRUEGER F., PLASS CH., ZACHARIAS M., BOCHTLER M., HORE T.A., JURKOWSKI T.P., Pronounced sequence specificity of the TET enzyme catalytic domain guides its cellular function. Science Advances (2022) 8(36): eabm2427 (15 p.) DOI: 10.1126/sciadv.abm2427 IF 14.957 (2021)

DRĄŻKOWSKA K., TOMECKI R., WARMIŃSKI M., BARAN N., CYSEWSKI D., DEPAIX A., KASPRZYK R., KOWALSKA J., JEMIELITY J., SIKORSKI P.J., 2 '-O-Methylation of the second transcribed nucleotide within the mRNA 5' cap impacts the protein production level in a cell-specific manner and contributes to RNA immune evasion. Nucleic Acids Research (2022) 50(16): 9051-9071 DOI: 10.1093/nar/gkac722 IF 19.160 (2021)

PRANKE I.M., CHEVALIER B., PREMCHANDAR A., BAATALLAH N., TOMASZEWSKI K.F., BITAM S., TONDELIER D., GOLEC A., STOLK J., LUKACS G.L., HIEMSTRA P.S., DADLEZ M., LOMAS D.A., IRVING J.A., DELAUNAY-MOISAN A., VAN ANKEN E., HINZPETER A., SERMET-GAUDELUS I., EDELMAN A., Keratin 8 is a scaffolding and regulatory protein of ERAD complexes. Cellular and Molecular Life Sciences (2022) 79(9): 503 (19 p.) DOI: 10.1007/s00018-022-04528-3 IF 9.207 (2021)

BONDARCHUK T.V., SHALAK V.F., LOZHKO D.M., FATALSKA A., SZCZEPANOWSKI R.H., LIUDKOVSKA V., TSUVARIEV O.Y.,DADLEZ M., EL'SKAYA A.V., NEGRUTSKII B.S., Quaternary organization of the human eEF1B complex reveals unique multi-GEF domain assembly. Nucleic Acids Research (2022) 50(16): 9490–9504 DOI: 10.1093/nar/gkac685 IF 19.160 (2021)

MARKOWSKA-BARKIC A., LEWICKA E., CZEREDYS M., MITURA M., JAGURA-BURDZY G., Deciphering the Regulatory Circuits of RA3 Replication Module - Mechanisms of the Copy Number Control. International Journal of Molecular Sciences (2022) 23(17): 9964 (31 p.) DOI: 10.3390/ijms23179964 IF 6.208 (2021)

RZEPNIKOWSKA W., KAMIŃSKA J., KOCHAŃSKI A., Validation of the Pathogenic Effect of IGHMBP2 Gene Mutations Based on Yeast S. cerevisiae Model. International Journal of Molecular Sciences (2022) 23(17): 9913 (17 p.) DOI: 10.3390/ijms23179913 IF 6.208 (2021)

KRZYSZTOŃ M., YATUSEVICH R., WRONA M., SACHAROWSKI S.P., ADAMSKA D., ŚWIEŻEWSKI S., Single seeds exhibit transcriptional heterogeneity during secondary dormancy induction. Plant Physiology (2022) 190(1): 211–225 DOI: 10.1093/plphys/kiac265 IF 8.005 (2021)

OKRASIŃSKA A., DECEWICZ P., MAJCHROWSKA M., DZIEWIT Ł., MUSZEWSKA A., DOLATABADI S., KRUSZEWSKI Ł., BŁOCKA Z., PAWŁOWSKA J., Marginal lands and fungi - linking the type of soil contamination with fungal community composition. Environmental Microbiology (2022) 24(8): 3809–3825 DOI: 10.1111/1462-2920.16007 IF 5.476 (2021)

KUBIAK KRZYSZTOF,GAFFKE L., PIERZYNOWSKA K., CYSKE Z., GRABOWSKI Ł., KOSZNIK-KWAŚNICKA K., JAROSZEWICZ W., WĘGRZYN A., WĘGRZYN G., Determination of Effects and Mechanisms of Action of Bacterial Amyloids on Antibiotic Resistance. Chapter 13 in: Bacterial Amyloids. Methods in Molecular Biology, vol 2538. Humana Press, New York. Ed. V. Arluison, F. Wien, A. Marcoleta. ISBN 978-1-0716-2528-6, 2022, p.189-205 DOI: 10.1007/978-1-0716-2529-3_13

MIERZEJEWSKI B., MICHALSKA Z., JACKOWSKI D., STREMIŃSKA W., JAŃCZYK-ILACH K., KOBLOWSKA M., IWANICKA-NOWICKA R., GROMADKA A., CIEMERYCH M.A., BRZOSKA E., The miR151 and miR5100 Transfected Bone Marrow Stromal Cells Increase Myoblast Fusion in IGFBP2 Dependent Manner. Stem Cell Reviews and Reports (2022) 18(6): 2164-2178 DOI: 10.1007/s12015-022-10350-y IF 6.692 (2021)

WEZYNFELD N.E., BONNA A.M., PŁONKA D., BAL W., FRĄCZYK T., Ni(II) Ions May Target the Entire Melatonin Biosynthesis Pathway—A Plausible Mechanism of Nickel Toxicity. Molecules (2022) 27(17): 5582 (13 p.) DOI: 10.3390/molecules27175582 IF 4.927 (2021)

KABZIŃSKA D., CHABROS K., KAMIŃSKA J., KOCHAŃSKI A., The GDAP1 p.Gly222Lys Variant-Weak Pathogenic Effect, Cumulative Effect of Weak Sequence Variants, or Synergy of Both Factors? Genes (2022) 13(9): 1546 (13 p.) DOI: 10.3390/genes13091546 IF 4.141 (2021)

KHARCHENKO V., EJCHART A., JAREMKO Ł., Protein Backbone and Side-chain ¹⁵N Spin Relaxation Techniques to Study Biomacromolecular Interactions. Chapter 3 in: NMR Spectroscopy for Probing Functional Dynamics at Biological Interfaces, New Developments in NMR, no 26. The Royal Society of Chemistry. Ed. A. Bhunia, H. S. Atreya, N. Sinha. ISBN 978-1-83916-209-1, 2022, p. 56-81 DOI: 10.1039/9781839165702-00056

KOSZNIK-KWAŚNICKA K., PODLACHA M., GRABOWSKI Ł., STASIŁOJĆ M., NOWAK-ZALESKA A., CIEMIŃSKA K., CYSKE Z., DYDECKA A., GAFFKE L., MANTEJ J.,MYŚLIŃSKA D., NECEL A., PIERZYNOWSKA K., PIOTROWSKA E., RADZANOWSKA-ALENOWICZ E., RINTZ E., SITKO K., TOPKA-BIELECKA G., WĘGRZYN G., WĘGRZYN A., Biological aspects of phage therapy versus antibiotics against Salmonella enterica serovar Typhimurium infection of chickens. Frontiers in Cellular and Infection Microbiology (2022) 12: 941867 (16 p.) DOI: 10.3389/fcimb.2022.941867 IF 6.073 (2021)

KARŁOWICZ A., DUBIEL A.B., CZERWIŃSKA J., BLEDEA A., PURZYCKI P., GRZELEWSKA M., MCAULEY R.J., SZCZĘSNY R.J., BRZUSKA G., KRÓL E., SZCZĘSNY B., SZYMAŃSKI M.R., In vitro reconstitution reveals a key role of human mitochondrial EXOG in RNA primer processing. Nucleic Acids Research (2022) 50(14): 7991–8007 DOI: 10.1093/nar/gkac581 IF 19.160 (2021)

KOŹMIŃSKI P., NIEDZIAŁEK D., WIECZOREK G., HALIK P.K., CZARNECKA K., ROGUT A., CHEDA Ł., ROGULSKI Z., SZYMAŃSKI P., GNIAZDOWSKA E., New Imaging Modality of COVID-19 Pneumonia Developed on the Basis of Alzheimer’s Disease Research. International Journal of Molecular Sciences (2022) 23(15): 8405 (17 p.) DOI: 10.3390/ijms23158405 IF 6.208 (2021)

KULIK T., MOLCAN T., FIEDOROWICZ G., VAN DIEPENINGEN A.D., STAKHEEV A., TREDER K., OLSZEWSKI J., BILSKA K., BEYER M., PASQUALI M., STENGLEIN S., Whole-genome single nucleotide polymorphism analysis for typing the pandemic pathogen Fusarium graminearum sensu stricto. Frontiers in Microbiology (2022) 13: 885978 (9 p.) DOI: 10.3389/fmicb.2022.885978 IF 6.064 (2021)

DIETRICH M.A., ADAMEK M., TEITGE F., TEICH L., JUNG-SCHROERS V., MALINOWSKA A., ŚWIDERSKA B., RAKUS K., KODZIK N., CHADZIŃSKA M., KAROL H., LISZEWSKA E., CIERESZKO A., Proteomic analysis of carp seminal plasma provides insights into the immune response to bacterial infection of the male reproductive system. Fish and Shellfish Immunology (2022) 127: 822-835 DOI: 10.1016/j.fsi.2022.07.019 IF 4.622 (2021)

KACZMARSKA Z., CZARNOCKI-CIECIURA M., GÓRECKA-MINAKOWSKA K.M., WINGO R.J., JACKIEWICZ J., ZAJKO W., POZNAŃSKI J., RAWSKI M., GRANT T., PETERS J.E., NOWOTNY M., Structural basis of transposon end recognition explains central features of Tn7 transposition systems. Molecular Cell (2022) 82(14): 2618-2632.e7 DOI: 10.1016/j.molcel.2022.05.005 IF 19.328 (2021)

DAS A., THAPA P., SANTIAGO U., SHANMUGAM N., BANASIAK K., DĄBROWSKA K., NOLTE H., SZULC NATALIA A., GATHUNGU R.M., CYSEWSKI D., KRÜGER M., DADLEZ M., NOWOTNY M., CAMACHO C.J., HOPPE T., POKRZYWA W., A heterotypic assembly mechanism regulates CHIP E3 ligase activity. EMBO Journal (2022) 41(15): e109566 ( 24 p.) DOI: 10.15252/embj.2021109566 IF 14.012 (2021)

BRYK-WIĄZANIA A.H., CYSEWSKI D., OCŁOŃ E., UNDAS A., Mass-spectrometric identification of oxidative modifications in plasma-purified plasminogen: Association with hypofibrinolysis in patients with acute pulmonary embolism. Biochemical and Biophysical Research Communications (2022) 621: 53-58 DOI: 10.1016/j.bbrc.2022.06.063 IF 3.322 (2021)

KOBRZYCKA A.T., STANKIEWICZ A.M., GOŚCIK J., GÓRA M., BURZYŃSKA B., IWANICKA-NOWICKA R., PIERZCHAŁA-KOZIEC K., WIECZOREK M., Hypothalamic Neurochemical Changes in Long-Term Recovered Bilateral Subdiaphragmatic Vagotomized Rats. Frontiers in Behavioral Neuroscience (2022) 16: 869526 (8 p.) DOI: 10.3389/fnbeh.2022.869526 IF 3.617 (2021)

HEMMERLE M., SENGER B., KUCHARCZYK R., BECKER H.D., Visualizing Mitochondrial Importability of a Protein Using the Yeast Bi-Genomic Mitochondrial-Split-GFP Strain and an Ordinary Fluorescence Microscope. Chapter 16 in: Mitochondria. Methods and Protocols, Methods in Molecular Biology, vol 2497. Humana New York, NY. Ed. N. Tomar. ISBN 978-1-0716-2308-4, 2022, p. 255-267 DOI: 10.1007/978-1-0716-2309-1_16

TRIBOUILLARD-TANVIER D., DAUTANT A., GODARD F., PANJA CH., DI RAGO J.-P., KUCHARCZYK R., Creation of Yeast Models for Evaluating the Pathogenicity of Mutations in the Human Mitochondrial Gene MT-ATP6 and Discovering Therapeutic Molecules. Chapter 14 in: Mitochondria. Methods and Protocols, Methods in Molecular Biology, vol 2497. Humana New York, NY. Ed. N. Tomar. ISBN 978-1-0716-2308-4, 2022, p. 221-242 DOI: 10.1007/978-1-0716-2309-1_14

TOMA A., DOS SANTOS C., BURZYŃSKA B., GÓRA M., KILISZEK M., STICKLE N., KIRSTEN H., KOSYAKOVSKY L.B., WANG B., VAN DIEPEN S., EPELMAN S., SZEKELY Y., MARSHALL J.C., BILLIA F., LAWLER P.R., Diversity in the Expressed Genomic Host Response to Myocardial Infarction. Circulation Research (2022) 131(1): 106-108 DOI: 10.1161/CIRCRESAHA.121.318391 IF 23.213 (2021)

DZIEMBOWSKI M., BIALIK R.J., The Remotely and Directly Obtained Results of Glaciological Studies on King George Island: A Review. Remote Sensing (2022) 14(12): 2736 (36 p.) DOI: 10.3390/rs14122736 IF 5.349 (2021)

KRZYWIŃSKA E., SZYMAŃSKA K.P., DOBROWOLSKA G., Inhibition of SnRK2 Kinases by Type 2C Protein Phosphatases. Chapter 2 in: Abscisic Acid. Methods and Protocols, Methods in Molecular Biology, vol 2462, Humana, New York NY. Ed. T.Yoshida. ISBN 978-1-0716-2155-4, 2022, p.17-30 DOI: 10.1007/978-1-0716-2156-1_2

FRĄCZYK T., CIEPLAK P., Neglected N-Truncated Amyloid-β Peptide and Its Mixed Cu-Zn Complexes. Protein Journal (2022) 41(3): 361-368 DOI: 10.1007/s10930-022-10056-7 IF 4.000 (2021)

GRECH-BARAN M., WITEK K., POZNAŃSKI J., GRUPA-URBAŃSKA A., MALINOWSKI T., LICHOCKA M., JONES J.DG., HENNIG J., The Ry_sto immune receptor recognises a broadly conserved feature of potyviral coat proteins. New Phytologist (2022) 235(3): 1179–1195 DOI: 10.1111/nph.18183 IF 10.323 (2021)

MACIEJEWSKA K., CZARNECKA K., KRĘCISZ P., NIEDZIAŁEK D., WIECZOREK G., SKIBIŃSKI R., SZYMAŃSKI P., Novel Cyclopentaquinoline and Acridine Analogs as Multifunctional, Potent Drug Candidates in Alzheimer's Disease. International Journal of Molecular Sciences (2022) 23(11): 5876 (22 p.) DOI: 10.3390/ijms23115876 IF 6.208 (2021)

JOPA S., WÓJCIK J., EJCHART A., NOWAKOWSKI M., NMR studies of inclusion complexes: naphthalene and natural cyclodextrins. Physical Chemistry Chemical Physics (2022) 24(22): 13690-13697 DOI: 10.1039/d2cp01152b IF 3.945 (2021)

RYGIEL A.M., UNGER L.S., SÖRGEL F.L., MASSON E., MATSUMOTO R., EWERS M., CHEN J-M., BUGERT P., BUSCAIL L., GAMBIN T., ORACZ G., WINIEWSKA-SZAJEWSKA M., MIANOWSKA A., POZNAŃSKI J., KOSIŃSKA J., STAWIŃSKI P., PŁOSKI R., KOZIEL D., GLUSZEK S., LAUMEN H., LINDGREN F., LÖHR J.M., OREKHOVA A., REBOURS V., ROSENDAHL J., PÁRNICZKY A., HEGYI P., SASAKI A., KATAOKA F., TANAKA Y., HAMADA S., SAHIN-TÓTH M., HEGYI E., FÉREC C., MASAMUNE A., WITT H., Variants in the pancreatic CUB and zona pellucida-like domains 1 (CUZD1) gene in early-onset chronic pancreatitis - A possible new susceptibility gene. Pancreatology (2022) 22(5): 564-571 DOI: 10.1016/j.pan.2022.04.015 IF 3.977 (2021)

DMUCHOWSKI W., BRĄGOSZEWSKA P., GOZDOWSKI D., BACZEWSKA-DĄBROWSKA A.B., CHOJNACKI T., JÓŹWIAK A., ŚWIEŻEWSKA E., SUWARA I., GWOREK B., Strategies of urban trees for mitigating salt stress: a case study of eight plant species. Trees-Structure and Function (2022) 36(3): 899-914 DOI: 10.1007/s00468-020-02044-0 IF 2.888 (2021)

JURKIEWICZ A., GRACZYK D., MAP kinases are involved in RNA polymerase III regulation upon LPS treatment in macrophages. Gene (2022) 831: 146548 (8 p.) DOI: 10.1016/j.gene.2022.146548 IF 3.913 (2021)

BISELLO G., KUŚMIERSKA K., VERBEEK M.V., SYKUT-CEGIELSKA J., WILLEMSEN M.A.A.P., WEVERS R.A., SZYMAŃSKA K., POZNAŃSKI J., DROŻAK J., WERTHEIM-TYSAROWSKA K., RYGIEL A.M., BERTOLDI M., The novel P330L pathogenic variant of aromatic amino acid decarboxylase maps on the catalytic flexible loop underlying its crucial role. Cellular and Molecular Life Sciences (2022) 79(6): 305 (16 p.) DOI: 10.1007/s00018-022-04343-w IF 9.207 (2021)

KOSZNIK-KWAŚNICKA K., STASIŁOJĆ M., GRABOWSKI Ł., ZDROJEWSKA K., WĘGRZYN G., WĘGRZYN A., Efficacy and safety of phage therapy against Salmonella enterica serovars Typhimurium and Enteritidis estimated by using a battery of in vitro tests and the Galleria mellonella animal model. Microbiological Research (2022) 261: 127052 (15 p.) DOI: 10.1016/j.micres.2022.127052 IF 5.07 (2021)

DMOWSKI M., MAKIEŁA-DZBEŃSKA K., JĘDRYCHOWSKA M., DENKIEWICZ-KRUK M., FIJAŁKOWSKA I.J., Mutation spectrum data for Saccharomyces cerevisiae psf1-1 pol2-M644G mutants. Data in Brief (2022) 42: 108223 (6 p.) DOI: 10.1016/j.dib.2022.108223 IF -

GROCHOWSKA J., CZERWIŃSKA J., BOROWSKI Ł.S., SZCZĘSNY R.J., Mitochondrial RNA, a new trigger of the innate immune system. Wiley Interdisciplinary Reviews-RNA (2022) 13(3): e1690 (21 p.) DOI: 10.1002/wrna.1690 IF 9.349 (2021)

BORSARI C., KELES E., McPHAIL J.A., SCHAEFER A., SRIRAMARATNAM R., GOCH W., SCHAEFER T., DE PASCALE M., BAL W., GSTAIGER M., BURKE J.E., WYMANN M.P., Covalent Proximity Scanning of a Distal Cysteine to Target PI3Kα. Journal of the American Chemical Society (2022) 144(14): 6326-6342 DOI: 10.1021/jacs.1c13568 IF 16.383 (2021)

IWAŃSKA O., LATOCH P., SUCHORA M., PIDEK I.A., HUBER M., BUBAK I., KOPIK N., KOVALENKO M., GĄSIOROWSKI M., ARMACHE J-P., STAROSTA A.L., Lake microbiome and trophy fluctuations of the ancient hemp rettery. Scientific Reports (2022) 12: 8846 (16 p.) DOI: 10.1038/s41598-022-12761-w IF 4.996 (2021)

SAŁAŃSKI P., KOWALCZYK M., BARDOWSKI J.K., SZCZEPANKOWSKA A.K., Health-Promoting Nature of Lactococcus lactis IBB109 and Lactococcus lactis IBB417 Strains Exhibiting Proliferation Inhibition and Stimulation of Interleukin-18 Expression in Colorectal Cancer Cells. Frontiers in Microbiology (2022) 13: 822912 (17 p.) DOI: 10.3389/fmicb.2022.822912 IF 6.064 (2021)

OOSTHUIZEN W.CH.,PISTORIUS P.A., KORCZAK-ABSHIRE M., HINKE J.T., SANTOS M., LOWTHER A.D., The foraging behavior of nonbreeding Adélie penguins in the western Antarctic Peninsula during the breeding season. Ecosphere (2022) 13(5): e4090 (16 p.) DOI: 10.1002/ecs2.4090 IF 3.593 (2021)

WÓJCIK-DŁUGOBORSKA K.A., OSIŃSKA M., BIALIK R.J., The Impact of Glacial Suspension Color on the Relationship Between Its Properties and Marine Water Spectral Reflectance. IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing (2022) 15: 3258-3268 DOI: 10.1109/JSTARS.2022.3166398 IF 4.715 (2021)

ZNÓJ A., GRZESIAK J., GAWOR J., GROMADKA R., CHWEDORZEWSKA K.J., Highly specialized bacterial communities within three distinct rhizocompartments of Antarctic hairgrass (Deschampsia antarctica Desv.) Polar Biology (2022) 45(5): 833 - 844 DOI: 10.1007/s00300-022-03027-2 IF 2.198 (2021)