Publikacje - Instytut Biochemii i Biofizyki Polskiej Akademii Nauk

WANG C., BRZEŹNIAK L., SACHAROWSKI S., KRZYSZTOŃ M., MANJUNATH V.H., OLECHOWSKI M.J., KULIK A., ŚWIEŻEWSKI S., UBA2A regulates seed dormancy and the stability of chromatin‐retained DOG1 messenger RNA. Journal of Integrative Plant Biology (2025) 67(12): 3109-3122 DOI: 10.1111/jipb.70056 IF 9.3 (2024)

PROCINO E., BOUZADA D., D`INGIULLO S., MARINACCIO L., ZHUKOV I., STEFANUCCI A., MOLLICA A., Greening the solid-phase peptide synthesis of the first bicyclic analogue of the arc repressor and its binding to DNA. Journal of Organic Chemistry (2025) 90(46): 16423−16431 DOI: 10.1021/acs.joc.5c01902 IF 3.6 (2024)

HOSZEK-MANDERA K., STANISZEWSKA M., BEŁDOWSKA M., FUDALA K., BIALIK R., HINKE J.T., POUCH A., PANASIUK A., Presence of toxic organic substances in antarctic wildlife as an indicator of human impact in the South Shetland Islands area (Western Antarctic). Journal of Hazardous Materials (2025) 500: 140567 (16 p.) DOI: 10.1016/j.jhazmat.2025.140567 IF 11.3 (2024)

RAKHMETULLINA A., LUBAS Z., ZIELENKIEWICZ P., Plant-derived miRNAs as potential cross-kingdom cancer regulators. Genes (2025) 16(12): 1441 (13 p.) DOI: 10.3390/genes16121441 IF 2.8 (2024)

JENNINGS S.J.A., Influence of glaciological structures on the spatial distribution of cryoconite holes, Northern Victoria Land, East Antarctica. Journal of Geophysical Research: Earth Surface (2025) 130(12): e2025JF00839 (24 p.) DOI: 10.1029/2025JF008399 IF 3.8 (2024)

ZAWISTOWSKI M., NIECIKOWSKI P., DURLIK M., NOWACZYK J., BRODA J., FORONCEWICZ B., MUCHA K., ET AL. Peritoneal dialysis catheter removal at the time or after kidney transplantation: A multicenter cardinality-matched cohort study. Advances in Clinical and Experimental Medicine (2025) 34(11): 1947-1957 DOI: 10.17219/acem/200075 IF 1.9 (2024)

NOVOSYLNA O.V., SHALAK V.F., DĄBROWSKA K., PATMANIDIS I., LOZHKO D., BONDARCHUK T.V., [...],DADLEZ M., NEGRUTSKII B.S., Dynamics and structural features of the eEF1A1 and eEF1A2 paralogs. Nucleic Acids Research (2025) 53: gkaf1177 (17 p.) DOI: 10.1093/nar/gkaf1177 IF 13.1 (2024)

KACZMARCZYK M., KĘDZIERSKA-KAPUZA K., SKONIECZNA-ŻYDECKA K., SURÓWKA A., DROŻDŻAL S., [...],SAMBOROWSKA E., ET AL. Modulating effects of microbiota on synbiotic intervention outcomes for microbiota-derived trimethylamine, trimethylamine N-oxide and indoxyl sulfate in healthy young medical students: insights from a 12-week randomized clinical trial. Journal of Translational Medicine (2025) 23(1): 1287(21 p.) DOI: 10.1186/s12967-025-07345-x IF 7.5 (2024)

de CREMOUX L., FALCONE E., SCHMITT D., STEFANIAK E., WIŚNIEWSKA M.D., VITALE N., BAL W., HUREAU CH., Modulation of Aβ1–40 and Aβ4–40 co-assembly by zinc: getting closer to the biological reality. Inorganic Chemistry Frontiers (2025) 12: 7827-7844 DOI: 10.1039/d5qi00850f IF 6.4 (2024)

JUNKIERT-CZARNECKA A., MACIAK K., KACPRZAK M.M., ŁOBODZIŃSKA A., SOBCZYŃSKA-TOMASZEWSKA A., JURKIEWICZ A., GÓRA M., BURZYŃSKA B., PILARSKA-DELTOW M., HAUS O., Functional analysis of a novel variant in the COL5A1 gene in a Polish patient with the classical type of Ehlers–Danlos syndrome. Frontiers in Genetics (2025) 16: 1689587 (6 p.) DOI: 10.3389/fgene.2025.1689587 IF 2.8 (2024)

BINENBAUM J., ADAMKOVA V., FRYER H., XU L., GORRINGE N., WŁODZIMIERZ P., ET AL. CRISPR targeting ofH3K4me3 activates gene expression and unlocks centromereproximal crossover recombination in Arabidopsis. Nature Communications (2025) 16: 9587 (13 p.) DOI: 10.1038/s41467-025-65167-3 IF 15.7 (2024)

WOJTYŁA C., KUPCEWICZ B., TOŁWIŃSKI I., SAMBOROWSKA E., RADKIEWICZ M., JAŹWIEC R., ET AL. Metabolome analysis as a potential source of endometriosis biomarkers with the use of multiomics approach in its diagnosis. Scientific Reports (2025) 15(1): 38682 (9 p.) DOI: 10.1038/s41598-025-22598-8 IF 3.9 (2024)

VASILEUSKAYA A., SZCZEPANKOWSKA A.K., GAWOR J., CHMIELEWSKA-JEZNACH M., ALEKSANDRZAK-PIEKARCZYK T., Draft genome sequence of Lactococcus lactis IBB2, a candidate probiotic strain isolated from bovine milk. Microbiology Resource Announcements (2025) 14(11): e0084625 (3 p.) DOI: 10.1128/mra.00846-25 IF 0.6 (2024)

ZĄBEK Z., WYCZAŁKOWSKA-TOMASIK A., POBOŻY K., ADAMUS J.P., TUREK G., ZĄBEK M., PĄCZEK L., Understanding the microenvironment of intervertebral disc degeneration: a comprehensive review of pathophysiological insights and therapeutic implications. International Journal of Molecular Sciences (2025) 26(20): 9938 (39 p.) DOI: 10.3390/ijms26209938 IF 4.9 (2024)

ROMANOWSKA M.J., ADAMUS J.P., STRUZIK S., PĄCZEK L., Fluoroquinolone-induced achilles tendon damage: structural and biochemical insights into collagen type i alterations. International Journal of Molecular Sciences (2025) 26(20): 10028 (15 p.) DOI: 10.3390/ijms262010028 IF 4.9 (2024)

GÓRAL T., GRELEWSKA-NOWOTKO K., OCHODZKI P., WIEWIÓRA B., DNA-based quantification of fusarium species in winter wheat grain in Poland from 2014 to 2017 and 2019. Agronomy (2025) 15(10): 2430 (18 p.) DOI: 10.3390/agronomy15102430 IF 3.4 (2024)

ŚWIRSKI M.I., TIERNEY J.A.S., ALBÀ MAR M., [...],SZCZĘSNY R.J., ET AL. Translon: a single term for translated regions. [Correspondence] Nature Methods (2025) 22(10): 2002-2006 DOI: 10.1038/s41592-025-02810-3 IF 32.1 (2024)

PAWŁOWSKI P.H., ZIELENKIEWICZ P., The fine structure of genome statistics - the frequency and size. Life (2025) 15(11): 1648 (25 p.) DOI: 10.3390/life15111648 IF 3.4 (2024)

SAMSONOV S.A., FRĄCZYK T., UFNALSKA I., BAL W., Molecular dynamics study of the impact of glycosylation on conformational
properties of trimeric N-terminal domain of human copper transporter 1. Carbohydrate Research (2025) 558: 109708 (5 p.) DOI: 10.1016/j.carres.2025.109708 IF 2.5 (2024)

ROE S.K., MAZGAJ R., ZHU T., ESMAEELI MOGHADDAM TABALVANDANI M., LEWIS L.A., GENCO C., WALDRON K.J., MASSARI P., The gonococcal vaccine candidate antigen NGO1701 is a N. gonorrhoeae periplasmic copper storage protein. PLoS Pathogens (2025) 21(10): e1013559 (21 p.) DOI: 10.1371/journal.ppat.1013559 IF 4.9 (2024)

NOWAKOWSKI M., WOLAK J., GIELNIK M., PIOTROWSKI A., ZHUKOV I., ŻYGOWSKA J., SZYMAŃSKA A., WIŚNIEWSKA M.D., BAL W., WÄRMLÄNDER S.K.T.S., KOZAK M., KWIATEK W. M., The structure of complexes between zinc(II) cations and histidine-rich repeats from the unstructured Nterminal domain of human prion protein. RSC Advances (2025) 15: 38422–38434 DOI: 10.1039/d5ra04584c IF 4.6 (2024)

DIETRICH M.A., KODZIK N., BAKUN M., SZCZEPKOWSKI M., CIERESZKO A., Phosphoproteomic profiling of Siberian sturgeon (Acipenser baerii, Brandt, 1869) sperm: insights into cryopreservation-induced changes with DMSO and methanol. Biology of Reproduction (2025) 113(4): 820–837 DOI: 10.1093/biolre/ioaf128 IF 3.0 (2024)

YAZICI E., McINTYRE J., The complex network of p300/CBP regulation: Interactions, posttranslational modifications, and therapeutic implications. Journal of Biological Chemistry (2025) 301(11): 110715 (18 p.) DOI: 10.1016/j.jbc.2025.110715 IF 3.9 (2024)

RESPEKTA-DŁUGOSZ N., PILCH K., RYTELEWSKA E., ŚWIDERSKA B., MALINOWSKA A., CHATYS J., RAMÉ CH., DUPONT J., KAMIŃSKI T., SMOLIŃSKA N., RAK A., Integrated transcriptomic and proteomic analysis of omentin-1effects on primary anterior pituitary cells from different pig breeds: an in vitro study. FASEB Journal (2025) 39(19): e71081 (29 p.) DOI: 10.1096/fj.202502202R IF 4.2 (2024)

RUDZKA A., PATLOKA O., PŁECHA M., ZBOROWSKI M., KRÓLIKOWSKI T., OCZKOWSKI M., KOŁOŻYN-KRAJEWSKA D., KRUK M., KARBOWIAK M., MOSIEJ W., ZIELIŃSKA D., A comparison of the response of the human intestinal microbiota to probiotic and nutritional interventions in vitro and in vivo - a case study. Nutrients (2025) 17(19): 3093 (21 p.) DOI: 10.3390/nu17193093 IF 5.0 (2024)

SZEWCZUK W., SZEWCZUK O., CZAJKOWSKI K., GROMADKA R., WALENDZIAK M., Exon 4 and intron 4 TP53 are both methylated in advanced‑stage ovarian carcinomas. Biomedical Reports (2025) 23(5): 176 (6 p.) DOI: 10.3892/br.2025.2054 IF 1.9 (2024)

KANIA M., DRAB Z., DĄBROWSKA M., SAMBOROWSKA E., ŻEBER-LUBECKA N., KULECKA M., KLUPA T., GREGORCZYK-MAGA I. Impact of diet and nutritional status on gingival crevicular fluid metabolome and microbiome in people with type 1 diabetes: a cross-sectional study. Scientific Reports (2025) 15(1): 32781 (15 p.) DOI: 10.1038/s41598-025-16690-2 IF 3.9 (2024)

BLICHARZ L., SAMBOROWSKA E., ZAGOŻDŻON R., CZUWARA J., ZYCH M., ROSZCZYK A., ZAREMBA M., DADLEZ M., SAMOCHOCKI Z., OLSZEWSKA M., RUDNICKA L., Food sensitization is associated with atopic dermatitis severity, gut‐derived metabolites and leaky gut in adults. Clinical and Translational Allergy (2025) 15(9): e70094 (10 p.) DOI: 10.1002/clt2.70094 IF 4.0 (2024)

KYRYCHENKO A., KOVALENKO O., SHCHUKIN Y., Polysaccharides and rhamnolipids of Pseudomonas aeruginosa ONU-301 as antiphytoviral agents and promising biotechnological materials. Journal of Ecological Engineering (2025) 26(12): 55-64 DOI: 10.12911/22998993/208263 IF 1.5 (2024)

IZDEBSKI W., KOSIOREK K., IZDEBSKI M., MIROWSKI K., CHARMAS R., The optimal strategy for supplying single-family homes with electricity using photovoltaic installations. Energies (2025) 18(18): 4909 (18 p.) DOI: 10.3390/en18184909 IF 3.2 (2024)

NIEDZIAŁEK D., WIECZOREK G., DRZEWICKA K., ANTOSIEWICZ A., MILEWSKI M., BARTOSZEWICZ A., OLCZAK J., ZASŁONA Z., Elucidation of the catalytic apparatus and mechanism of human chitotriosidase‑1. ACS Catalysis (2025) 15(19): 16748−16761 DOI: 10.1021/acscatal.5c00507 IF 13.1 (2024)

KURYŁEK A., GAWOR J., ŻUCHNIEWICZ K., GROMADKA R., KERN-ZDANOWICZ I., Genome-wide identification of essential genes in the invasive Streptococcus anginosus strain. Scientific Reports (2025) 15(1): 32863 (12 p.) DOI: 10.1038/s41598-025-18002-0 IF 3.9 (2024)

AHN M., STREIT J.O., WAUDBY CH.A., WŁODARSKI T., FIGUEIREDO A.M., CHRISTODOULOU J., KUMITA J.R., Amyloid forming human lysozyme intermediates are stabilized by non-native amide-π interactions. Advanced Science (2025) 12(34): e03957 (14 p.) DOI: 10.1002/advs.202503957 IF 14.1 (2024)

McFARLANE R.A., RADIN J.N., MAZGAJ R., WALDRON K.J., LALAOUNA D., KEHL-FIE T., A manganese-sparing response balances competing cellular demands to enable Staphylococcus aureus infection. mBio (2025) 16(9): e01439-25 (17 p.) DOI: 10.1128/mbio.01439-25 IF 4.7 (2024)

ZADALI R., TOMECKI R., TOPF U., Ribosomal protein Rps29 / uS14 contributes to 18S rRNA maturation and its abundance regulates osmotic stress response in S. cerevisiae. Nucleic Acids Research (2025) 53(16): gkaf807 (16 p.) DOI: 10.1093/nar/gkaf807 IF 13.1 (2024)

ROZBAHANI H., ZANGOOIE A., MIRABDOLHOSSEINI S.M., FATEMI N., NOROUZINIA M., SEDEGHI A., SELEHI Z., NAZEMALHOSSEINI-MOJARAD E., Targeted delivery of microRNA sponge short-hairpin RNA via vir-inspired biotechnical vector: enhancing cancer therapy. Gene Expression (2025) 24(4): e00042 (16 p.) DOI: 10.14218/GE.2025.00042

DAS A., BARUA D., PAL S., GOGOI A., BARAH P., CroPCS: crop plants combined stress knowledgebase. Journal of Biosciences (2025) 50: 69 (13 p.) DOI: 10.1007/s12038-025-00545-z IF 1.9 (2024)

ZIELENKIEWICZ U., KAUSHAL V., KACZANOWSKI S., On the origins and evolution of apoptosis: the predator - mitochondrial prey hypothesis. Journal of Evolutionary Biology (2025) 38(8): 1031–1040 DOI: 10.1093/jeb/voaf039 IF 2.3 (2024)

REINDL A.R., WOLSKA L., PAWŁOWSKI J., HOSZEK-MANDERA K., BEŁDOWSKA M., FUDALA K., BIALIK R.J., PANASIUK A., Pygoscelis penguins as indicators of perfluoroalkyl substances pollution and global health risks - case study from King George Island (Western Antarctic). Environmental Research (2025) 285(Pt 3): 122475 (7 p.) DOI: 10.1016/j.envres.2025.122475 IF 7.7 (2024)

WIŚNIEWSKA M.J., WENCEL A., JAKUBOWSKA M., MOTYL J., DUDEK K., BURZYŃSKA B., PIJANOWSKA D.G., PLUTA K., Variable expression of hepatic genes in different liver tumor cell lines: conclusions for drug testing. Frontiers in Cell and Developmental Biology (2025) 13: 1646602 (16 p.) DOI: 10.3389/fcell.2025.1646602 IF 4.3 (2024)

WIEWIÓRSKA-KRATA N., MOSZCZUK B., TAŃSKA J., KNIOŁA E., GRYWALSKA E., PĄCZEK L., FORONCEWICZ B., MUCHA K., Serum peroxiredoxins reflect oxidative stress and predict renal outcomes in patients with glomerulonephritis. International Journal of Molecular Sciences (2025) 26(16) : 7708 (12 p.) DOI: 10.3390/ijms26167708 IF 4.9 (2024)

MIR M.Y., SEH B.A., ZAHRA S., LEGRADI A., The crucial interplay between the lungs, brain, and heart to understand epilepsy-linked SUDEP: A literature review. Brain Sciences (2025) 15(8): 809 (34 p.) DOI: 10.3390/brainsci15080809 IF 2.8 (2024)

RACHOWKA J., SZELĄGOWSKI D., MANK K., TANWAR U., BUCHOLC M., DOBROWOLSKA G., DĘBSKI J., KĘSY J., GIERCZEWSKA K., GARSTKA M., KONOPKA-POSTUPOLSKA D., Transcriptome profiling implicates ANNEXIN1 in light sensitivity and hormonal balance maintenance in Arabidopsis thaliana. Plant Physiology and Biochemistry (2025) 229(Pt A): 110363 (23 p.) DOI: 10.1016/j.plaphy.2025.110363 IF 5.7 (2024)

WIBBERG D., BAKUŁA Z., GARCIA-CUNCHILLOS I., GAWOR J., GROMADKA R., KARNKOWSKA A., BIELECKI J., JAGIELSKI T., Complete mitochondrial genomes of the Prototheca genus: comparative genomics and evolutionary insights. BMC Genomics (2025) 26(1): 766 (10 p.) DOI: 10.1186/s12864-025-11952-9 IF 3.7 (2024)

PAC-SOSIŃSKA M., PALUSINSKA-SZYSZ M., SZTANDERA-TYMOCZEK M., ŚWIDERSKA U., WDOWIAK-WRÓBEL S., MALINOWSKA A., ŚWIDERSKA B., SZUSTER-CIESIELSKA A., Biochemical characteristics of extracts from proallergenic microfungi Erysiphe Palczewskii and Erysiphe convolvuli. BMC Genomics (2025) 26(1): 754 (18 p.) DOI: 10.1186/s12864-025-11862-w IF 3.7 (2024)

JEDYNAK-SLYVKA M., KACZMARSKA Z., GRACZYK D., JURKIEWICZ A., FIGIEL M., BOROWSKI Ł.S., SZCZĘSNY R.J., NOWOTNY M., Genome-wide in vivo and ex vivo mapping of R-loops using engineered N-terminal hybrid-binding domain of RNase H3 (enDR3). Nucleic Acids Research (2025) 53(15): gkaf792 DOI: 10.1093/nar/gkaf792 IF 13.1 (2024)

ŻYŁA A., ZHUKOV I., TAUBE M., WOJCIECHOWSKA D., WOLAK J., JURCZAK P., CZAPLEWSKA P., SZYMAŃSKA A., MARTEL A., KOZAK M., Comprehensive analysis of interactions between human serum albumin and human cystatin C − two proteins present in body fluids. ACS Omega (2025) 10(32): 36299−36309 DOI: 10.1021/acsomega.5c04317 IF 4.3 (2024)

SACHAROWSKI S.P., KRZYSZTOŃ M., BRZEŹNIAK L., ROGOWSKI K.J., MONTEZ M., ROSOL K., WRONA M., YATUSEVICH R., MANJUNATH V.H., SZEWC Ł., JARMOŁOWSKI A., ŚWIEŻEWSKI S., Chromatin retained MUSHER lncRNA integrates ABA and DOG1 signalling pathways to enhance Arabidopsis seeds dormancy. Nature Communications ( 2025) 16(1): 7545 (18 p.) DOI: 10.1038/s41467-025-62991-5 IF 15.7 (2024)

MALLET T., LAMER T., ALEKSANDRZAK-PIEKARCZYK T., McKAY R.T., CATENZA K., SIT C., RAINEY J.K., TOWLE-STRAUB K.M., VEDERAS J.C., VAN BELKUM M.J., Solution structure of the broad-spectrum bacteriocin Garvicin Q. International Journal of Molecular Sciences (2025) 26(16): 7846 (17 p.) DOI: 10.3390/ijms26167846 IF 4.9 (2024)

ONUK M., STEFANIUK A., DOROSHENKO I., POZNAŃSKI J., Densimetry of diluted aqueous salt solutions and molecular dynamics simulations identify temperature dependent differences between the hydration of anions and cations. Scientific Reports (2025) 15(1): 29005 (12 p.) DOI: 10.1038/s41598-025-14329-w IF 3.9 (2024)