Publikacje | Instytut Biochemii i Biofizyki Polskiej Akademii Nauk

KONWERSKI M., GROMADKA A., ARENDARCZYK A., KOBLOWSKA M., IWANICKA-NOWICKA R., WILIMSKI R., CZUB P., FILIPIAK K.J., HENDZEL P., ZIELENKIEWICZ P., OPOLSKI G., GĄSECKA A., MAZUREK T., Atherosclerosis pathways are activated in pericoronary adipose tissue of patients with coronary artery disease. Journal of Inflammation Research (2021) 14: 5419-5431 DOI: 10.2147/JIR.S326769 IF 6.922 (2020)

KRUPOVIC M., TURNER D., MOROZOVA V., ŁOBOCKA M., ET AL. Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021. Archives of Virology (2021) 166(11): 3239 - 3244 DOI: 10.1007/s00705-021-05205-9 IF 2.574 (2020)

KOMIAŻYK M., WALORY J., GAWOR J., KSIĄŻEK I., GROMADKA R., BARANIAK A., Case report of COVID-19 after full vaccination: viral loads and anti-Sars-Cov-2 antibodies. Diagnostics (2021) 11(10): 1815 (6 p.) DOI: 10.3390/diagnostics11101815 IF 3.706 (2020)

BOJARSKA J., MIECZKOWSKI A., ZIORA Z., SKWARCZYŃSKI M., TOTH I., SHALASH A.O., PARANG K., EL-MOWAFI S.A., MOHAMMED E.H.M., ELNAGDY S., ALKHAZINDAR M., WOLF W.M., Cyclic dipeptides: the biological and structural landscape with special focus on the anti-cancer proline-based scaffold. Biomolecules (2021) 11(10): 1515 (66) DOI: 10.3390/biom11101515 IF 4.879 (2020)

WOJTYŚ M.I., JAŹWIEC R., KAZAZIĆ S., AŠLER I.L., KNEŽEVIĆ P., SABO V.A.., LUIĆ M., JAGUSZTYN-KRYNICKA E.K., BZOWSKA A., A comprehensive method for determining cellular uptake of purine nucleoside phosphorylase and adenylosuccinate synthetase inhibitors by H. pylori. Applied Microbiology and Biotechnology (2021) 105(20): 7949-7967 DOI: 10.1007/s00253-021-11510-9 IF 4.813 (2020)

MARCINKOWSKI M., PILŻYS T., GARBICZ D., PIWOWARSKI J., PRZYGOŃSKA K., WINIEWSKA-SZAJEWSKA M., FERENC K., SKOROBOGATOV O., POZNAŃSKI J., GRZESIUK E., Calmodulin as Ca²⁺-dependent interactor of FTO dioxygenase. International Journal of Molecular Sciences (2021) 22(19): 10869 (18 p.) DOI: 10.3390/ijms221910869 IF 5.923 (2020)

HEROK M., WAWRZYNÓW B., MAŁUSZEK M.J., OLSZEWSKI M.B., ŻYLICZ A., ŻYLICZ M., Chemotherapy of HER2-and MDM2-enriched breast cancer subtypes induces homologous recombination DNA repair and chemoresistance. Cancers (2021) 13(18): 4501 (20 p.) DOI: 10.3390/cancers13184501 IF 6.639 (2020)

CHRABĄSZCZEWSKA M., WINIEWSKA-SZAJEWSKA M., OSTROWSKA N., BOJARSKA E., STĘPIŃSKI J., MANCEWICZ Ł., ŁUKASZEWICZ M., TRYLSKA J., TAUBE M., KOZAK M., DARŻYNKIEWICZ E., GRZELA R., Insight into the binding and hydrolytic preferences of hNudt16 based on nucleotide diphosphate substrates. International Journal of Molecular Sciences (2021) 22(20): 10929 (22 p.) DOI: 10.3390/ijms222010929 IF 5.923 (2020)

VAISMAN A., ŁAZOWSKI K., REIJNS M.A.M., WALSH E., MCDONALD J.P., MORENO K.C., QUIROS D.R., SCHMIDT M., KRANZ H., YANG W., MAKIEŁA-DZBEŃSKA K., WOODGATE R., Novel Escherichia coli active site dnaE alleles with altered base and sugar selectivity. Molecular Microbiology (2021) 116(3): 909-925 DOI: 10.1111/mmi.14779 IF 3.501 (2020)

TKACHUK Z., MELNICHUK N., NIKOLAIEV R.O, SZUTKOWSKI K., ZHUKOV I., The natural oligoribonucleotides functionalized by D-mannitol affected interactions of hemagglutinin with glycan receptor indicating anti-influenza activity. Membranes (2021) 11(10): 757 (13 p.) DOI: 10.3390/membranes11100757 IF 4.106 (2020)

NECEL A., BLOCH S., NEJMAN-FALEŃCZYK B., DYDECKA A., TOPKA-BIELECKA G., WĘGRZYN A., WĘGRZYN G., A validation system for selection of bacteriophages against Shiga toxin-producing Escherichia coli contamination. Toxins (2021) 13(9): 664 (14 p.) DOI: 10.3390/toxins13090644 IF 4.546 (2020)

BOCHEŃSKA K., MOSKOT M., SMOLIŃSKA-FIJOŁEK E., JAKÓBKIEWICZ-BANECKA J., SZCZERKOWSKA-DOBOSZ A., SŁOMIŃSKI B., GABIG-CIMIŃSKA M., Impact of isoflavone genistein on psoriasis in in vivo and in vitro investigations. Scientific Reports (2021) 11(1): 18297 DOI: 10.1038/s41598-021-97793-4 IF 4.379 (2020)

ŁABUZ J., SZTATELMAN O., JAGIEŁŁO-FLASIŃSKA D., HERMANOWICZ P., BAŻANT A., BANAŚ A.K., BARTNICKI F., GIZA A., KOZŁOWSKA A., LASOK H., SITKIEWICZ E., KRZESZOWIEC W., GABRYŚ H., STRZAŁKA W., Phototropin interactions with SUMO proteins. Plant and Cell Physiology (2021) 62(4): 693-707 DOI: 10.1093/pcp/pcab027 IF 4.927 (2020)

MUCHA O., PODKALICKA P., KAZIRÓD K., SAMBOROWSKA E., DULAK J., ŁOBODA A., Simvastatin does not alleviate muscle pathology in a mouse model of Duchenne muscular dystrophy. Skeletal Muscle (2021) 11(1): 21 (16 p.) DOI: 10.1186/s13395-021-00276-3 IF 4.912 (2020)

HOJKA-OSIŃSKA A., CHLEBOWSKI A., GROCHOWSKA J., OWCZAREK E.P., AFFEK K., KŁOSOWSKA-KOSICKA K., SZCZĘSNY R.J., DZIEMBOWSKI A., Landscape of functional interactions of human processive ribonucleases revealed by high-throughput siRNA screenings. iScience (2021) 24(9): 103036 (31 p.) DOI: 10.1016/j.isci.2021.103036 IF 5.458 (2020)

GRZESIAK J., WOLTYŃSKA A., ZDANOWSKI M.K., GÓRNIAK D., ŚWIĄTECKI A., OLECH M.A., ALEKSANDRZAK-PIEKARCZYK T., Metabolic fingerprinting of the Antarctic cyanolichen Leptogium puberulum–associated bacterial community (Western Shore of Admiralty Bay, King George Island, Maritime Antarctica). Microbial Ecology (2021) 82(3): 818-829 DOI: 10.1007/s00248-021-01701-2 IF 4.552 (2020)

SOSNOWSKA M., KUTWIN M., STROJNY B., WIERZBICKI M., CYSEWSKI D., SZCZEPANIAK J., FICEK M., KOCZOŃ P., JAWORSKI S., CHWALIBOG A., SAWOSZ E., Diamond nanofilm normalizes proliferation and metabolism in liver cancer cells. Nanotechnology Science and Applications (2021) 14: 115-137 DOI: 10.2147/NSA.S322766 IF -

SYNEK L., PLESKOT R., SEKEREŠ J., SERRANO N., VUKAŠINOVIĆ N., ORTMANNOVÁ J., KLEJCHOVÁ M., PEJCHAR P., BATYSTOVÁ K., GUTKOWSKA M., JANKOVÁ-DRDOVÁ J., MARKOVIĆ V., PEČENKOVÁ T., SANTRUČEK J., ŽARSKÝ V., POTOCKÝ M., Plasma membrane phospholipid signature recruits the plant exocyst complex via the EXO70A1 subunit. Proceedings of the National Academy of Sciences USA (2021) 118(36): e2105287118 (12 p.) DOI: 10.1073/pnas.2105287118 IF 11.205 (2020)

CHABIOR A., GĄSECKA A., MARCHEL M., GOZDOWSKA R., MAKOWSKA A., MACIAK K., GÓRA M., FILIPIAK K.J., BURZYŃSKA B., OPOLSKI G., Expression of versican mRNA transcript to predict cardiac remodeling after myocardial infarction. Kardiologia Polska (2021) 79 (7-8): 833-840 DOI: 10.33963/KP.a2021.0042 IF 3.108 (2020)

DRABIŃSKA J., STECZKIEWICZ K., KUJAWA M., KRASZEWSKA E., Searching for biological function of the mysterious PA2504 protein from Pseudomonas aeruginosa. International Journal of Molecular Sciences (2021) 22(18): 9833 (18 p.) DOI: 10.3390/ijms22189833 IF 5.923 (2020)

SZYMAŃSKI M., RUSETSKA N., JANCEWICZ I., ARMATOWSKA A., LIGAJ M., CHRZAN A., HINCZA K., KOWALIK A., MIKA P., KISIEL M., ŻOŁNIEREK J., KOSIOR J., DEMKOW T., SIEDLECKI J.A., SARNOWSKI T.J., SARNOWSKA E., Succinate dehydrogenase-deficient renal cancer featuring fructose-1,6-biphosphatase loss, pyruvate kinase M2 overexpression, and SWI/SNF chromatin remodeling complex aberrations: a rare case report. Oncologist (2021) 26(9): e1652-e1655 DOI: 10.1002/onco.13825 IF -

ROŻEK W., KWAŚNIK M., MALINOWSKA A., STASIAK K., LARSKA M., ROLA J., Proteomic analysis of the secretome of equine herpesvirus-1 infected rabbit kidney cells. Research in Veterinary Science (2021) 140: 134-141 DOI: 10.1016/j.rvsc.2021.08.014 IF 2.534 (2020)

TURTOLA M., MANAV M.C., KUMAR A., TUDEK A., MROCZEK S., KRAWCZYK P.S., DZIEMBOWSKI A., SCHMID M., PASSMORE L.A., CASAÑAL A., JENSEN T.H., Three-layered control of mRNA poly(A) tail synthesis in Saccharomyces cerevisiae. Genes & Development (2021) 35(17-18): 1290-1303 DOI: 10.1101/gad.348634.121 IF 11.361 (2020)

MOYSA A., STECZKIEWICZ K., NIEDZIAŁEK D., HAMMERSCHMID D., ZHUKOVA L., SOBOTT F., DADLEZ M., A model of full-length RAGE in complex with S100B. Structure (2021) 29(9): 989-1002 DOI: 10.1016/j.str.2021.04.002 IF 5.006 (2020)

TUDEK A., KRAWCZYK P.S., MROCZEK S., TOMECKI R., TURTOLA M., MATYLLA-KULIŃSKA K., JENSEN T.H., DZIEMBOWSKI A., Global view on the metabolism of RNA poly(A) tails in yeast Saccharomyces cerevisiae. Nature Communications (2021) 12(1): 4951 (14 p.) DOI: 10.1038/s41467-021-25251-w IF 14.919 (2020)

PODLACHA M., GRABOWSKI Ł., KOSZNIK-KWAŚNICKA K., ZDROJEWSKA K., STASIŁOJĆ M., WĘGRZYN G., WĘGRZYN A., Interactions of bacteriophages with animal and human organisms—safety issues in the light of phage therapy. International Journal of Molecular Sciences (2021) 22(16): 8937 (40 p.) DOI: 10.3390/ijms22168937 IF 5.923 (2020)

BIESZCZAD B., GARBICZ D., ŚWITALSKA M., DUDEK M.K., WARSZYCKI D., WIETRZYK J., GRZESIUK E., MIECZKOWSKI A., Improved HDAC inhibition, stronger cytotoxic effect and higher selectivity against leukemias and lymphomas of novel, tricyclic Vorinostat analogues. Pharmaceuticals (2021) 14(9): 851 (17 p.) DOI: 10.3390/ph14090851 IF 5.863 (2020)

SYNORADZKI K.J., BARTNIK E., CZARNECKA A.M., FIEDOROWICZ M., FIRLEJ W., BRODZIAK A., STASIŃSKA A., RUTKOWSKI P., GRIEB P., TP53 in biology and treatment of osteosarcoma. Cancers (2021) 13(17): 4284 (24 p.) DOI: 10.3390/cancers13174284 IF 6.639 (2020)

MASZKOWSKA J., SZYMAŃSKA K.P., KASZTELAN A., KRZYWIŃSKA E., SZTATELMAN O., DOBROWOLSKA G., The multifaceted regulation of SnRK2 kinases. Cells (2021) 10(9): 2180 (23 p.) DOI: 10.3390/cells10092180 IF 6.600 (2020)

CHRISTENSEN L.F.B., ALIJANVAND S.H., BURDUKIEWICZ M., HERBST F-A., KJELDAL H., DUEHOLM M.S., OTZEN D.E., Identification of amyloidogenic proteins in the microbiomes of a rat Parkinson's disease model and wild-type rats. Protein Science (2021) 30(9): 1854-1870 DOI: 10.1002/pro.4137 IF 6.725 (2020)

SZUFA K.M., MIETELSKI J.W., OLECH M.A., Assessment of internal radiation exposure to Antarctic biota due to selected natural radionuclides in terrestrial and marine environment. Journal Of Environmental Radioactivity (2021) 237: 106713 (9 p.) DOI: 10.1016/j.jenvrad.2021.106713 IF 2.674 (2020)

BYSTRANOWSKA D., SKORUPSKA A., SOŁTYS K., PADJASEK M., KRĘŻEL A., ŻAK A., KAUS-DROBEK M., TAUBE M., KOZAK M., OŻYHAR A., Nucleobindin-2 consists of two structural components: The Zn²⁺-sensitive N-terminal half, consisting of nesfatin-1 and -2, and the Ca²⁺-sensitive C-terminal half, consisting of nesfatin-3. Computational And Structural Biotechnology Journal (2021) 19: 4300-4318 DOI: 10.1016/j.csbj.2021.07.036 IF 7.271 (2020)

JANCEWICZ I., SZARKOWSKA J., KONOPIŃSKI R., STACHOWIAK M., ŚWIĄTEK M., BŁACHNIO K., KUBALA S., OKSIŃSKA P., ĆWIEK P., RUSETSKA N., TUPALSKA A., ZEBER-LUBECKA N., GRABOWSKA E., ŚWIDERSKA B., MALINOWSKA A., MIKUŁA M., JAGIELSKA B., WALEWSKI J., SIEDLECKI J.A., SARNOWSKI T.J., MARKOWICZ S., SARNOWSKA E., PD-L1 overexpression, SWI/SNF complex deregulation, and profound transcriptomic changes characterize cancer-dependent exhaustion of persistently activated CD4+ T cells. Cancers (2021) 13(16): 4148 (21 p.) DOI: 10.3390/cancers13164148 IF 6.639 (2020)

KONOPELSKI P., KONOP M.,PERLEJEWSKI K., BUKOWSKA-OSKO I., RADKOWSKI M., ONYSZKIEWICZ M., JAWORSKA K., MOGILNICKA I., SAMBOROWSKA E., UFNAL M., Genetically determined hypertensive phenotype affects gut microbiota composition, but not vice versa. Journal of Hypertension (2021) 39(9): 1790-1799 DOI: 10.1097/HJH.0000000000002864 IF 4.844 (2020)

WALKER P.J., SIDDELL S.G., LEFKOWITZ E.J., MUSHEGIAN A.R., ADRIAENSSENS E.M., ALFENAS-ZERBINI P., DAVISON A.J., DEMPSEY D.M., DUTILH B.E., GARCIA M.L., HARRACH B., HARRISON R.L., HENDRICKSON R.C.,JUNGLEN S., KNOWLES N.J., KRUPOVIC M., KUHN J.H., LAMBERT A.J., ŁOBOCKA M., ET AL. Changes to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2021). Archives of Virology (2021) 166(9): 2633-2648 DOI: 10.1007/s00705-021-05156-1 IF 2.574 (2020)

ZIELNIOK K., BURDZIŃSKA A., PIEŃKOWSKI V.M., KOPPOLU A., RYDZANICZ M., ZAGOŻDŻON R., PĄCZEK L., Gene expression profile of human mesenchymal stromal cells exposed to hypoxic and pseudohypoxic preconditioning—an analysis by RNA sequencing. International Journal of Molecular Sciences (2021) 22(15): 8160 (25 p.) DOI: 10.3390/ijms22158160 IF 5.923 (2020)

JAROŃCZYK K., SOSNOWSKA K., ZABOROWSKI A., PUPEL P., BUCHOLC M., MAŁECKA E., SIWIRYKOW N., STACHULA P., IWANICKA-NOWICKA R., KOBLOWSKA M., JERZMANOWSKI A., ARCHACKI R., Bromodomain-containing subunits BRD1, BRD2, and BRD13 are required for proper functioning of SWI/SNF complexes in Arabidopsis. Plant Communications (2021) 2(4): 100174 (15 p.) DOI: 10.1016/j.xplc.2021.100174 IF -

TUREK M., BANASIAK K., PIECHOTA M., SHANMUGAM N., MACIAS M., ŚLIWIŃSKA M.A., NIKLEWICZ M., KOWALSKI K., NOWAK N., CHACIŃSKA A., POKRZYWA W., Muscle-derived exophers promote reproductive fitness. EMBO Reports (2021) 22(8): e5207 (13 p.) DOI: 10.15252/embr.202052071 IF 8.807 (2020)

SIKORA M., KISS N., STEC A., GIEBUŁTOWICZ J., SAMBOROWSKA E., JAŹWIEC R., DADLEZ M., OLSZEWSKA M., RUDNICKA L., Trimethylamine N-Oxide, a gut microbiota-derived metabolite, is associated with cardiovascular risk in Psoriasis: a cross-sectional pilot study. Dermatology and Therapy (2021) 11(4): 1277-1289 DOI: 10.1007/s13555-021-00547-3 IF 3.264 (2020)

STEFANOWICZ K., SZYMAŃSKA-CHARGOT M., TRUMAN W., WALEROWSKI P., OLSZAK M., AUGUSTYNIAK A., KOSMALA A., ZDUNEK A., MALINOWSKI R., Plasmodiophora brassicae-triggered cell enlargement and loss of cellular integrity in root systems are mediated by pectin demethylation. Frontiers in Plant Science (2021) 12: 711838 (15 p.) DOI: 10.3389/fpls.2021.711838 IF 5.753 (2020)

MODRZEJEWSKA M., KAWAŁEK A., BARTOSIK A.A., The LysR-type transcriptional regulator BsrA (PA2121) controls vital metabolic pathways in Pseudomonas aeruginosa. mSystems (2021) 6(4): e0001521 (19 p.) DOI: 10.1128/mSystems.00015-21 IF 6.496 (2020)

JEDYNAK-SLYVKA M., JABCZYŃSKA A., SZCZĘSNY R.J., Human mitochondrial RNA processing and modifications: overview. International Journal of Molecular Sciences (2021) 22(15): 7999 (23 p.) DOI: 10.3390/ijms22157999 IF 5.923 (2020)

ROJEK J., TUCKER M.R., RYCHŁOWSKI M., NOWAKOWSKA J., GUTKOWSKA M., The Rab Geranylgeranyl Transferase beta subunit is essential for embryo and seed development in Arabidopsis thaliana. International Journal of Molecular Sciences (2021) 22(15): 7907 (26 p.) DOI: 10.3390/ijms22157907 IF 5.923 (2020)

BERTHOLD-PLUTA A., GARBOWSKA M., STEFAŃSKA I., STASIAK-RÓŻAŃSKA L., ALEKSANDRZAK-PIEKARCZYK T., PLUTA A., Microbiological quality of nuts, dried and candied fruits, including the prevalence of Cronobacter spp. Pathogens (2021) 10: 900 (13 p.) DOI: 10.3390/pathogens10070900 IF 3.492 (2020)

DALLNER G., BENTINGER M., HUSSAIN S., SINHA I., YANG J., SCHWANK-XU C., ZHENG X., ŚWIEŻEWSKA E., BRISMAR K., VALLADOLID-ACEBES I., TEKLE M., Dehydro-tocotrienol-counteracts oxidative-stress-induced diabetes complications in db/db mice. Antioxidants (2021) 10(7): 1070 (20 p.) DOI: 10.3390/antiox10071070 IF 6.312 (2020)

WIERZBICKI A.T., BLEVINS T., ŚWIEŻEWSKI S., Long noncoding RNAs in plants. Annual Review of Plant Biology (2021) 72: 245 - 271 DOI: 10.1146/annurev-arplant-093020-035446 IF 26.379 (2020)

ŚLADOWSKA M., TUREK M., KIM M-J., DRABIKOWSKI K., MUSSULINI B.H.M., MOHANRAJ K., SERWA R.A., TOPF U., CHACIŃSKA A., Proteasome activity contributes to pro-survival response upon mild mitochondrial stress in Caenorhabditis elegans. Plos Biology (2021) 19(7): e3001302 (32 p.) DOI: 10.1371/journal.pbio.3001302 IF 8.029 (2020)

ŁOBOCKA M., GĄGAŁA U., Prophage P1: an example of a prophage that is maintained as a plasmid. Chapter in: Bacteriophages, Springer. Ed. D.R. Harper, S.T. Abedon, B.H. Burrowes, M.L. McConville; online ISBN 978-3-319-40598-8, 2021 (13 p.) DOI: 10.1007/978-3-319-40598-8_54-1

DETMAN A., LAUBITZ D., CHOJNACKA A., KIELA P.R., SALAMON A., BARBERAN A., CHEN Y., YANG F., BŁASZCZYK M.K., SIKORA A., Dynamics of dark fermentation microbial communities in the light of lactate and butyrate production. Microbiome (2021) 9(1): 158 (21p.) DOI: 10.1186/s40168-021-01105-x IF 14.650 (2020)

BARCHIESI A., BAZZANI V., JABCZYŃSKA A., BOROWSKI Ł.S., OELJEKLAUS S., WARSCHEID B., CHACIŃSKA A., SZCZĘSNY R.J., VASCOTTO C., DNA repair protein APE1 degrades dysfunctional abasic mRNA in mitochondria affecting oxidative phosphorylation. Journal of Molecular Biology (2021) 443(18): 167125 (21p.) DOI: 10.1016/j.jmb.2021.167125 IF 5.469 (2020)