Publikacje | Instytut Biochemii i Biofizyki Polskiej Akademii Nauk

WÓJCIK-DŁUGOBORSKA K.A., OSIŃSKA M., BIALIK R.J., The Impact of Glacial Suspension Color on the Relationship Between Its Properties and Marine Water Spectral Reflectance. IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing (2022) 15: 3258-3268 DOI: 10.1109/JSTARS.2022.3166398 IF 3.784 (2020)

ZNÓJ A., GRZESIAK J., GAWOR J., GROMADKA R., CHWEDORZEWSKA K.J., Highly specialized bacterial communities within three distinct rhizocompartments of Antarctic hairgrass (Deschampsia antarctica Desv.) Polar Biology (2022) 45(5): 833 - 844 DOI: 10.1007/s00300-022-03027-2 IF 2.310 (2020)

CZARNECKI J., CHAPKAUSKAITSE E., BOS J., SENTKOWSKA D., WAWRZYNIAK P., WYSZYŃSKA A., SZUPLEWSKA M., BARTOSIK D., Differential Localization and Functional Specialization of parS Centromere-Like Sites in repABC Replicons of Alphaproteobacteria. Applied and Environmental Microbiology (2022) 88(8): e0020722 (12 p.) DOI: 10.1128/aem.00207-22 IF 4.792 (2020)

BAJER A., BECK A., BECK R., BEHNKE J.M., DWUŻNIK-SZAREK D., EICHENBERGER R.M., FARKAS R., FUEHRER H-P., HEDDERGOTT M., JOKELAINEN P., LESCHNIK M., OBORINA V., PAULAUSKAS A., RADZIJEVSKAJA J., RANKA R., SCHNYDER M., SPRINGER A., STRUBE CH., TOŁKACZ K., WALOCHNIK J., Babesiosis in Southeastern, Central and Northeastern Europe: An Emerging and Re-Emerging Tick-Borne Disease of Humans and Animals. Microorganisms (2022) 10(5): 945 (41 p.) DOI: 10.3390/microorganisms10050945 IF 4.128 (2020)

KAMIŃSKA J., SOCZEWKA P., RZEPNIKOWSKA W., ŻOŁĄDEK T., Yeast as a Model to Find New Drugs and Drug Targets for VPS13-Dependent Neurodegenerative Diseases. International Journal of Molecular Sciences (2022) 23(9): 5106 (24 p.) DOI: 10.3390/ijms23095106 IF 5.924 (2020)

GAWOR A., GAJEWSKI Z., PĄCZEK L., CZARKOWSKA-PĄCZEK B., KONOPKA A., WRYK G., BULSKA E., Fluorine-Containing Drug Administration in Rats Results in Fluorination of Selected Proteins in Liver and Brain Tissue. International Journal of Molecular Sciences (2022) 23(8): 4202 (11 p.) DOI: 10.3390/ijms23084202 IF 5.924 (2020)

WILAMOWSKA A., KOBLOWSKA M., MATLAKOWSKA R., Postdiagenetic Changes in Kerogen Properties and Type by Bacterial Oxidation and Dehydrogenation. Molecules (2022) 27(8): 2408 (17 p.) DOI: 10.3390/molecules27082408 IF 4.412 (2020)

MOSSAKOWSKA B.J., SHAHMORADI-GHAHE S., CYSEWSKI D., FABISIEWICZ A., TUDEK B., SIEDLECKI J.A., Mechanisms of Resistance to Photodynamic Therapy (PDT) in Vulvar Cancer. International Journal of Molecular Sciences (2022) 23(8): 4117 (19 p.) DOI: 10.3390/ijms23084117 IF 5.924 (2020)

MOSZCZUK B., KRATA N., RUDNICKI W., FORONCEWICZ B., CYSEWSKI D., PĄCZEK L., KALETA B., MUCHA K., Osteopontin-A Potential Biomarker for IgA Nephropathy: Machine Learning Application. Biomedicines (2022) 10(4): 734 (15 p.) DOI: 10.3390/biomedicines10040734 IF 6.081 (2020)

ŁABĘDZKA-DMOCH K., RAŻEW M., GAPIŃSKA M., PIĄTKOWSKI J., KOLONDRA A., SALMONOWICZ H., WENDA J.M., NOWOTNY M., GOLIK P., The Pet127 protein is a mitochondrial 5'-to-3' exoribonuclease from the PD-(D/E)XK superfamily involved in RNA maturation and intron degradation in yeasts. RNA (2022) 28(5): 711 - 728 DOI: 10.1261/rna.079083.121 IF 4.942 (2020)

ŠVEC P., KRÁLOVÁ S., STAŇKOVÁ E., HOLOCHOVÁ P., SEDLÁŘ K., KOUDELKOVÁ S., KRSEK D., GRZESIAK J., ŠEDO O., VÁCZI P., URVASHI,GUPTA V., SOOD U., LAL R., KORPOLE S., SEDLÁČEK I., Pedobacter fastidiosus sp. nov., isolated from glacial habitats of maritime Antarctica. International Journal of Systematic and Evolutionary Microbiology (2022) 72(4): 005309 (9 p.) DOI: 10.1099/ijsem.0.005309 IF 2.747 (2020)

MUCHA K., STAROS R., FORONCEWICZ B., ZIARKIEWICZ-WRÓBLEWSKA B., KOSIERADZKI M., NAZAREWSKI S., NAUMNIK B., RASZEJA-WYSZOMIRSKA J.,ZIENIEWICZ K., PĄCZEK L., Comparison of Post-Transplantation Lymphoproliferative Disorder Risk and Prognostic Factors between Kidney and Liver Transplant Recipients. Cancers (2022) 14(8): 1953 (13 p.) DOI: 10.3390/cancers14081953 IF 6.639 (2020)

CZMIL A., WROŃSKI M., CZMIL S., SOCHACKA-PIETAL M., CMIL M., GAWOR J., WOŁKOWICZ T., PLEWCZYŃSKI D., STRZAŁKA D., PIĘTAL M., NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology. PeerJ (2022) 10: e13056 (13 p.) DOI: 10.7717/peerj.13056 IF 2.984 (2020)

WĘGRZYN A., KRYSIAK M., KULIK A., GIECZEWSKA K.B., MAZUR R., STN7 Kinase Is Essential for Arabidopsis thaliana Fitness under Prolonged Darkness but Not under Dark-Chilling Conditions. International Journal of Molecular Sciences (2022) 23(9): 4531 (18 p.) DOI: 10.3390/ijms23094531 IF 5.924 (2020)

ZARĘBA-KOZIOŁ M., BURDUKIEWICZ M., WYSŁOUCH-CIESZYŃSKA A., Intracellular Protein S-Nitrosylation—A Cells Response to Extracellular S100B and RAGE Receptor. Biomolecules (2022) 12(5): 613 (23 p.) DOI: 10.3390/biom12050613 IF 4.879 (2020)

SWATLER J., TUROS-KORGUL L., BREWIŃSKA-OLCHOWIK M., DE BIASI S., DUDKA W., LE B.V., KOMINEK A., CYRANOWSKI S., PILANC P., MOHAMMADI E., CYSEWSKI D., KOZŁOWSKA E., GRABOWSKA-PYRZEWICZ W., WOJDA U., BASAK G., MIECZKOWSKI J., SKORSKI T., COSSARIZZA A., PIWOCKA K., 4-1BBL-containing leukemic extracellular vesicles promote immunosuppressive effector regulatory T cells. Blood Advances (2022) 6(6): 1879-1894 DOI: 10.1182/bloodadvances.2021006195 IF 6.799 (2020)

ORZECHOWSKA K., DOBRZYŃ K., KIEŻUN M., MALINOWSKA A., ŚWIDERSKA B., KAMIŃSKI T., SMOLIŃSKA N., Chemerin Effect on the Endometrial Proteome of the Domestic Pig during Implantation Obtained by LC-MS/MS Analysis. Cells (2022) 11(7): 1161 (16 p.) DOI: 10.3390/cells11071161 IF 6.600 (2020)

PODOBAS E.I., GUTOWSKA-OWSIAK D., MORETTI S., POZNAŃSKI J., KULIŃCZAK M., GRYNBERG M., GRUCA A., BONNA A., PŁONKA D., OGG G., BAL W., Ni²⁺-Assisted Hydrolysis May Affect the Human Proteome; Filaggrin Degradation Ex Vivo as an Example of Possible Consequences. Frontiers in Molecular Biosciences (2022) 9: 828674 (16 p.) DOI: 10.3389/fmolb.2022.828674 IF 5.246 (2020)

DASZCZYŃSKA A., KRUCOŃ T., STASIUK R., KOBLOWSKA M., MATLAKOWSKA R., Lanthanide-Dependent Methanol Metabolism of a Proteobacteria-Dominated Community in a Light Lanthanide-Rich Deep Environment. International Journal of Molecular Sciences (2022) 23(7): 3947 (15 p.) DOI: 10.3390/ijms23073947 IF 5.924 (2020)

ASHRAF K.U., NYGAARD R., VICKERY O.N., ERRAMILLI S.K., HERRERA C.M., McCONVILLE, T.H., PETROU V.I., GIACOMETTI S.I., DUFRISNE, M.B.,NOSOL K., ZINKLE A.P., GRAHAM C.L.B., LOUKERIS M., KLOSS B., SKORUPIŃSKA-TUDEK K., ŚWIEŻEWSKA E., ROPER D.I., CLARKE O.B.,UHLEMANN A-C., KOSSIAKOFF A.A., TRENT M.S., STANSFELD P.J., MANCIA F., Structural basis of lipopolysaccharide maturation by the O-antigen ligase. Nature (2022) 604(7905): 371–376 DOI: 10.1038/s41586-022-04555-x IF 49.962 (2020)

DA CUNHA M. F.,PRANKE I., SASSI A., SCHREIWEIS CH., MORICEAU S., VIDOVIC D., HATTON A., CARLON S.M., CRESTE G., BERHAL F., PRESTAT G., FREUND R., ODOLCZYK N., JAIS J.P., GRAVIER-PELLETIER CH., ZIELENKIEWICZ P., JULLIEN V., HINZPETER A., OURY F., EDELMAN A., SERMET-GAUDELUS I., Systemic bis-phosphinic acid derivative restores chloride transport in Cystic Fibrosis mice. Scientific Reports (2022) 12(1): 6132 (9p.) DOI: 10.1038/s41598-022-09678-9 IF 4.380 (2020)

BEDNAREK A., CENA A., IZAK W., BIGOS J., ŁOBOCKA M., Functional Dissection of P1 Bacteriophage Holin-like Proteins Reveals the Biological Sense of P1 Lytic System Complexity. International Journal of Molecular Sciences (2022) 23(8): 4231 (21 p.) DOI: 10.3390/ijms23084231 IF 5.924 (2020)

ZERBINI F.M., SIDDELL S.G., MUSHEGIAN A.R., WALKER P.J., LEFKOWITZ E.J., ADRIAENSSENS E.M., ALFENAS-ZERBINI P., DUTILH B.E., GARCIA M.L., JUNGLEN S., KRUPOVIC M., KUHN J.H., LAMBERT A.J., ŁOBOCKA M., OKSANEN H.M., ROBERTSON D.L., RUBINO L., SABANADZOVIC S., SIMMONDS P., SUZUKI N., VAN DOORSLAER K., VANDAMME A-M., VARSANI A., Differentiating between viruses and virus species by writing their names correctly. Archives of Virology (2022) 167(4): 1231-1234 DOI: 10.1007/s00705-021-05323-4 IF 2.574 (2020)

BARCZAK-BRZYŻEK A., BRZYŻEK G., KOTER M., SIEDLECKA E., GAWROŃSKI P., FILIPECKI M., Plastid retrograde regulation of miRNA expression in response to light stress. BMC Plant Biology (2022) 22(1): 150 (15 p.) DOI: 10.1186/s12870-022-03525-9 IF 4.215 (2020)

GRABOWSKI Ł., GAFFKE L., PIERZYNOWSKA K., CYSKE Z., CHOSZCZ M., WĘGRZYN G., WĘGRZYN A., Enrofloxacin—The Ruthless Killer of Eukaryotic Cells or the Last Hope in the Fight against Bacterial Infections? International Journal of Molecular Sciences (2022) 23(7): 3648 (22 p.) DOI: 10.3390/ijms23073648 IF 5.924 (2020)

OWSIAN D., GRUCHOTA J., ARNAIZ O., NOWAK J.K., The transient Spt4-Spt5 complex as an upstream regulator of non-coding RNAs during development. Nucleic Acids Research (2022) 50(5): 2603-2620 DOI: 10.1093/nar/gkac106 IF 16.971 (2020)

SZCZEPANEK-PARULSKA E., BUDNY B., BOROWCZYK M., ZHUKOV I., SZUTKOWSKI K., ZAWADZKA K., TAHIR R., MINCZYKOWSKI A., NIEDZIELA M., RUCHAŁA M., NKX2-5 Variant in Two Siblings with Thyroid Hemiagenesis. International Journal of Molecular Sciences (2022) 23(6): 3414 (10 p.) DOI: 10.3390/ijms23063414 IF 5.924 (2020)

STĘPIEŃ K., SKONECZNA A., KULA-MAXIMENKO M., JURCZYK Ł., MOŁOŃ M., Depletion of the Origin Recognition Complex Subunits Delays Aging in Budding Yeast. Cells (2022) 11(8): 1252 (43 p.) DOI: 10.3390/cells11081252 IF 6.600 (2020)

MORCINEK-ORŁOWSKA J., ZDROJEWSKA K., WĘGRZYN A., Bacteriophage-Encoded DNA Polymerases-Beyond the Traditional View of Polymerase Activities. International Journal of Molecular Sciences (2022) 23(2): 635 (17 p.) DOI: 10.3390/ijms23020635 IF 5.924 (2020)

OPPERT B., MUSZEWSKA A., STECZKIEWICZ K., ET AL. The Genome of Rhyzopertha dominica (Fab.) (Coleoptera: Bostrichidae): Adaptation for Success. Genes (2022) 13(3): 446 (43 p.) DOI: 10.3390/genes13030446 IF 4.096 (2020)

KASAREŁŁO K., KÖHLING I., KOSOWSKA A., PUCIA K., ŁUKASIK A., CUDNOCH-JĘDRZEJEWSKA A., PĄCZEK L., ZIELENKIEWICZ U., ZIELENKIEWICZ P., The Anti-Inflammatory Effect of Cabbage Leaves Explained by the Influence of bol-miRNA172a on FAN Expression. Frontiers in Pharmacology (2022) 13: 846830 (8 p.) DOI: 10.3389/fphar.2022.846830 IF 5.811 (2020)

BOGUTA M., Assembly of RNA polymerase III complex involves a putative co-translational mechanism. Gene (2022) 824: 146394 (5 p.) DOI: 10.1016/j.gene.2022.146394 IF 3.688 (2020)

WIŃSKA P., WIDŁO Ł., SENKARA E., KORONKIEWICZ M., CIEŚLA J.M., KRZYŚKO A., SKIERKA K., CIEŚLA J., Inhibition of Protein Kinase CK2 Affects Thymidylate Synthesis Cycle Enzyme Level and Distribution in Human Cancer Cells. Frontiers in Molecular Biosciences (2022) 9: 847829 (13 p.) DOI: 10.3389/fmolb.2022.847829 IF 5.246 (2020)

PAWŁOWSKI P.H., SARS-CoV-2 variant Omicron (B.1.1.529) is in a rising trend of mutations increasing the positive electric charge in crucial regions of the spike protein S. Acta Biochimica Polonica (2022) 69(1): 263–264 DOI: 10.18388/abp.2020_6072 IF 2.149 (2020)

MADILL-THOMSEN K.S., ABOULJOUD M., BHATI C., CISZEK M., DURLIK M., FENG S., FORONCEWICZ B., FRANCIS I., GRĄT M., JURCZYK K., KLINTMALM G., KRASNODĘBSKI M., MCCAUGHAN G., MIQUEL R., MONTANO-LOZA A., MOONKA D., MUCHA K., MYŚLAK M., PĄCZEK L., ET AL. The molecular phenotypes of injury, steatohepatitis, and fibrosis in liver transplant biopsies in the INTERLIVER study. American Journal of Transplantation (2022) 22(3): 909-926 DOI: 10.1111/ajt.16890 IF 8.086 (2020)

CHMIELEWSKA-JEZNACH M., STECZKIEWICZ K., KOBYŁECKI K., BARDOWSKI J.K., SZCZEPANKOWSKA A.K., An Adenosine Triphosphate- Dependent 5′-3′ DNA Helicase From sk1-Like Lactococcus lactis F13 Phage. Frontiers in Microbiology (2022) 13: 840219 (13 p.) DOI: 10.3389/fmicb.2022.840219 IF 5.640 (2020)

KABALA A.M., BIŃKO K., GODARD F., CHARLES C., DAUTANT A., BARANOWSKA E., SKOCZEŃ N., GOMBEAU K., BOUHIER M., BECKER H.D., ACKERMAN S.H., STEINMETZ L.M., TRIBOUILLARD-TANVIER D., KUCHARCZYK R., DI RAGO J.-P., Assembly-dependent translation of subunits 6 (Atp6) and 9 (Atp9) of ATP synthase in yeast mitochondria. Genetics (2022) 220(3): iyac007 (15 p.) DOI: 10.1093/genetics/iyac007 IF 4.562 (2020)

DOAN K., NIEDZIAŁKOWSKA M., STEFANIAK K., STANKOVIC A., ET AL. Phylogenetics and phylogeography of red deer mtDNA lineages during the last 50 000 years in Eurasia. Zoological Journal of the Linnean Society (2022) 194(2): 431-456 DOI: 10.1093/zoolinnean/zlab025 IF 3.286 (2020)

GIELNIK M., ZHUKOVA L., ZHUKOV I., GRÄSLUND A., KOZAK M., WÄRMLÄNDER S.K.T.S., The engineered peptide construct NCAM1-Aβ inhibits fibrillization of the human prion protein (PrP). Acta Biochimica Polonica (2022) 69(1): 257-261 DOI: 10.18388/abp.2020_5679 IF 2.149 (2020)

KLUSKA K., VERONESI G., DENIAUD A., HAJDU B., GYURCSIK B., BAL W., KRĘŻEL A., Structures of Silver Fingers and a Pathway to Their Genotoxicity. Angewandte Chemie International Edition (2022) 61(12): e202116621 (8 p.) DOI: 10.1002/anie.202116621 IF 15.336 (2020)

GAWRYŚ K., TUREK-JAKUBOWSKA A., GAWRYŚ J., JAKUBOWSKI M., DĘBSKI J., SZAHIDEWICZ-KRUPSKA E., TROCHA M., DERKACZ A., DOROSZKO A., Platelet-Derived Drug Targets and Biomarkers of Ischemic Stroke—The First Dynamic Human LC-MS Proteomic Study. Journal of Clinical Medicine (2022) 11(5): 1198 (15 p.) DOI: 10.3390/jcm11051198 IF 4.242 (2020)

ROBAK A., KISTOWSKI M., WOJTAS G., PERZANOWSKA A., TARGOWSKI T., MICHALAK A., KRASOWSKI G., DADLEZ M., DOMAŃSKI D., Diagnosing pleural effusions using mass spectrometry-based multiplexed targeted proteomics quantitating mid- to high-abundance markers of cancer, infection/inflammation and tuberculosis. Scientific Reports (2022) 12(1): 3054 (18 p.) DOI: 10.1038/s41598-022-06924-y IF 4.380 (2020)

KOWAL K., TKACZYK-WLIZŁO A., PIERZCHAŁA M., GAWOR J., ŚLASKA B., Molecular differences in mitochondrial DNA genomes of dogs with malignant mammary tumours. Veterinary and Comparative Oncology (2022) 20(1): 256-264 DOI: 10.1111/vco.12772 IF 2.613 (2020)

BACZEWSKA-DĄBROWSKA A.H., DMUCHOWSKI W., GOZDOWSKI D., GWOREK B., JÓŹWIAK A., ŚWIEŻEWSKA E., DĄBROWSKI P., SUWARA I., The importance of prenol lipids in mitigating salt stress in the leaves of Tilia × euchlora trees. Trees-Structure and Function (2022) 36(1): 393–404 DOI: 10.1007/s00468-021-02214-8 IF 2.529 (2020)

KULESZA A., ZIELNIOK K., HAWRYLUK J., PĄCZEK L., BURDZIŃSKA A., Ibuprofen in Therapeutic Concentrations Affects the Secretion of Human Bone Marrow Mesenchymal Stromal Cells, but Not Their Proliferative and Migratory Capacity. Biomolecules (2022) 12(2): 287 (19 p.) DOI: 10.3390/biom12020287 IF 4.879 (2020)

LIU CH., SKORUPIŃSKA-TUDEK K., ERIKSSON S-G., PARMRYD I., Potentiating Vγ9Vδ2 T cell proliferation and assessing their cytotoxicity towards adherent cancer cells at the single cell level. Biology Open (2022) 11(1): bio059049 (10 p.) DOI: 10.1242/bio.059049 IF 2.422 (2020)

SZYMAŃSKA A., MUCHA K., KOSIERADZKI M., NAZAREWSKI S., PĄCZEK L., FORONCEWICZ B., Organization of Post-Transplant Care and the 5-Year Outcomes of Kidney Transplantation. International Journal of Environmental Research and Public Health (2022) 19(4): 2010 (12 p.) DOI: 10.3390/ijerph19042010 IF 3.390 (2020)

VAN BEL M., SILVESTRI F., WEITZ E.M., KREFT Ł., BOTZKI A., COPPENS F., VANDEPOELE K., PLAZA 5.0: extending the scope and power of comparative and functional genomics in plants. Nucleic Acids Research (2022) 50(D1): D1468-D1474 DOI: 10.1093/nar/gkab1024 IF 16.971 (2020)

KLOSKA A., CECH G.M., NOWICKI D., MACIĄG-DORSZYŃSKA M., BOGUCKA A.E., MARKERT S., BECHER D., POTRYKUS K., CZAPLEWSKA P., SZALEWSKA-PAŁASZ A., Three Microbial Musketeers of the Seas: Shewanella baltica, Aliivibrio fischeri and Vibrio harveyi, and Their Adaptation to Different Salinity Probed by a Proteomic Approach. International Journal of Molecular Sciences (2022) 23(2): 619 (29 p.) DOI: 10.3390/ijms23020619 IF 5.924 (2020)

KRZYSZTOŃ M., KUFEL J., Analysis of mRNA‑derived siRNAs in mutants of mRNA maturation and surveillance pathways in Arabidopsis thaliana. Scientific Reports (2022) 12(1): 1474 (13 p.) DOI: 10.1038/s41598-022-05574-4 IF 4.380 (2020)