Publikacje - Instytut Biochemii i Biofizyki Polskiej Akademii Nauk

GHIOTTO G., DETMAN-IGNATOWSKA A., CHOJNACKA A., ORELLANA E., DE BERNARDINI N., FRAULINI S., TREU L., SIKORA A., CAMPANARO S., Decipher syntrophies within C2-C4 organic acids-degrading anaerobic microbiomes: A multi-omic exploration. Chemical Engineering Journal (2024) 489: 151390 (12 p.) DOI: 10.1016/j.cej.2024.151390 IF 15.1 (2022)

MAZGAJ R., LIPIŃSKI P., STARZYŃSKI R.R., Iron Supplementation of Pregnant Sows to Prevent Iron Deficiency Anemia in Piglets: A Procedure of Questionable Effectiveness. International Journal of Molecular Sciences (2024) 25(7): 4106 (14 p.) DOI: 10.3390/ijms25074106 IF 5.6 (2022)

BOROWSKA-BESZTA M., SMOKTUNOWICZ M., HOROSZKIEWICZ D., JOŃCA J., WALERON M.M., GAWOR J., MIKA A., ŚLEDZIŃSKI T., WALERON K., WALERON M., Comparative genomics, pangenomics, and phenomic studies of Pectobacterium betavasculorum strains isolated from sugar beet, potato, sunflower, and artichoke: insights into pathogenicity, virulence determinants, and adaptation to the host plant. Frontiers in Plant Science (2024) 15: 1352318 (30 p.) DOI: 10.3389/fpls.2024.1352318 IF 5.6 (2022)

MIELECKI D., DETMAN A., ALEKSANDRZAK-PIEKARCZYK T., WIDOMSKA M., CHOJNACKA A., STACHURSKA-SKRODZKA A., WALCZAK P., GRZESIUK E., SIKORA A., Unlocking the genome of the non-sourdough Kazachstania humilis MAW1: insights into inhibitory factors and phenotypic properties. Microbial Cell Factories (2024) 23: 111 (24 p.) DOI: 10.1186/s12934-024-02380-7 IF 6.4 (2022)

DZIEDZIC A., MICHLEWSKA S., JÓŹWIAK P., DĘBSKI J., KARBOWNIK M.S., ŁACZMAŃSKI Ł., KUJAWA D., GLIŃSKA S., MILLER E., NIWALD M., KLOC M., BALCERZAK Ł., SALUK J., Quantitative and structural changes of blood platelet cytoskeleton proteins in multiple sclerosis (MS). Journal of Autoimmunity (2024) 145: 103204 (22 p.) DOI: 10.1016/j.jaut.2024.103204 IF 12.8 (2022)

GIERMASIŃSKA-BUCZEK K., GAWOR J., STEFAŃCZYK E., GĄGAŁA U., ŻUCHNIEWICZ K., REKOSZ-BURLAGA H., GROMADKA R., ŁOBOCKA M., Interaction of bacteriophage P1 with an epiphytic Pantoea agglomerans strain-the role of the interplay between various mobilome elements. Frontiers in Microbiology (2024) 15: 1356206 (18 p.) DOI: 10.3389/fmicb.2024.1356206 IF 5.2 (2022)

ZHANG D., CZAPIŃSKA H., BOCHTLER M., WLODAWER A., LUBKOWSKI J., RrA, an enzyme from Rhodospirillum rubrum, is a prototype of a new family of short-chain L-asparaginases. Protein Science (2024) 33(4): e4920 (19 p.) DOI: 10.1002/pro.4920 IF 8.0 (2022)

RYMASZEWSKI W., GISKA F., PIECHOCKI M.A., ZEMBEK P.B., KRZYMOWSKA M., Formation of HopQ1:14-3-3 complex in the host cytoplasm modulates nuclear import rate of Pseudomonas syringae effector in Nicotiana benthamiana cells. Frontiers in Plant Science (2024) 15: 1335830 (8 p.) DOI: 10.3389/fpls.2024.1335830 IF 5.6 (2022)

MACIAK K., JURKIEWICZ A., STROJNY W., ADAMOWICZ-SALACH A., ROMISZEWSKA M., JACKOWSKA T., KWIECIŃSKA K., POZNAŃSKI J., GÓRA M., BURZYŃSKA B., PKLR mutations in pyruvate kinase deficient Polish patients: Functional characteristics of c.101-1G > A and c.1058delAAG variants. Blood Cells Molecules and Diseases (2024) 107: 102841 (6 p.) DOI: 10.1016/j.bcmd.2024.102841 IF 2.3 (2022)

SZCZUPAJ G., WÓJCIK J., EJCHART A., NOWAKOWSKI M., NMR studies of complex formation between natural cyclodextrins and benzene. Journal of Inclusion Phenomena and Macrocyclic Chemistry (2024) 104: 129–136 DOI: 10.1007/s10847-024-01222-8 IF 2.3 (2022)

JASTRZĄB R., TOMECKI R., JURKIEWICZ A., GRACZYK D., SZCZEPANKOWSKA A.K., MYTYCH J., WOLMAN D., SIEDLECKI P., The strain-dependent cytostatic activity of Lactococcus lactis on CRC cell lines is mediated through the release of arginine deiminase. Microbial Cell Factories (2024) 23(1): 82 (20 p.) DOI: 10.1186/s12934-024-02345-w IF 6.4 (2022)

WAWRZYŃSKA A., SIRKO A., Sulfate Availability and Hormonal Signaling in the Coordination of Plant Growth and Development. International Journal of Molecular Sciences (2024) 25(7): 3978 (21 p.) DOI: 10.3390/ijms25073978 IF 5.6 (2022)

KOPCZYŃSKA J., KOWALCZYK M., The potential of short-chain fatty acid epigenetic regulation in chronic low-grade inflammation and obesity. Frontiers in Immunology (2024) 15: 1380476 (20 p.) DOI: 10.3389/fimmu.2024.1380476 IF 7.3 (2022)

KLIM J., ZIELENKIEWICZ U., KACZANOWSKI S., Loss-of-function mutations are main drivers of adaptations during short-term evolution. Scientific Reports (2024) 14(1): 7128 (8 p.) DOI: 10.1038/s41598-024-57694-8 IF 4.6 (2022)

LESZCZYŃSKA J., SZCZEPANKOWSKA A.K., MAJAK I., MAŃKOWSKA D., SMOLIŃSKA B., ŚCIESZKA S., DIOWKSZ A., CUKROWSKA B., ALEKSANDRZAK-PIEKARCZYK T., Reducing Immunoreactivity of Gluten Peptides by Probiotic Lactic Acid Bacteria for Dietary Management of Gluten-Related Diseases. Nutrients (2024) 16(7): 976 (14 p.) DOI: 10.3390/nu16070976 IF 5.9 (2022)

SZCZEPAŃSKA A., OLEK K., KOŁODZIEJSKA K., YU J., IBRAHIM A.T., ADAMKIEWICZ L., SCHROEDER F.C., POKRZYWA W., TUREK M., Pheromone-based communication influences the production of somatic extracellular vesicles in C. elegans. Nature Communications (2024) 15(1): 2715 (19 p.) DOI: 10.1038/s41467-024-47016-x IF 16.6 (2022)

GRZESIAK J., ROGALA M.M., GAWOR J., KOUŘILOVÁ X., OBRUČA S., Polyhydroxyalkanoate involvement in stress-survival of two psychrophilic bacterial strains from the High Arctic. Applied Microbiology and Biotechnology (2024) 108(1): 273 (14 p.) DOI: 10.1007/s00253-024-13092-8 IF 5.0 (2022)

BUGARA B., DURBAS M., KUDRYCKA M., MALINOWSKA A., HORWACIK I., ROKITA H., Silencing of the PHLDA1 leads to global proteome changes and differentiation pathways of human neuroblastoma cells. Frontiers in Pharmacology (2024) 15: 1351536 (16 p.) DOI: 10.3389/fphar.2024.1351536 IF 5.6 (2022)

PIOTROWSKA J., NIEMIRO A., SIEŃKO M., OLSZAK M., SALAMAGA H., WAWRZYŃSKA A., SIRKO A., Generation and characterization of single and multigene Arabidopsis thaliana mutants in LSU1-4 (RESPONSE TO LOW SULFUR) genes. Plant Science (2024) 343: 112063 (10 p.) DOI: 10.1016/j.plantsci.2024.112063 IF 5.2 (2022)

WĄCHALSKA M., RIEPE C., ŚLUSARZ M.J., GRAUL M., BOROWSKI Ł.S., QIAO W., FOLTYŃSKA M., CARETTE J.E., BIEŃKOWSKA-SZEWCZYK K., SZCZĘSNY R.J., KOPITO R.R., LIPIŃSKA A.D., The herpesvirus UL49.5 protein hijacks a cellular C-degron pathway to drive TAP transporter degradation. Proceedings of the National Academy of Sciences USA (2024) 121(11): e2309841121 (11 p.) DOI: 10.1073/pnas.2309841121 IF 11.1 (2022)

ABDULLAH S., MUKHERJEE S., SHWETA,DEBNATH B., The prevention of multi-drug resistance in cancers through the application of nanotechnology-based targeted delivery systems for combination therapies involving traditional Chinese medicine. Pharmacological Research - Modern Chinese Medicine (2024) 10: 100386 (15 p.) DOI: 10.1016/j.prmcm.2024.100386 IF- (2022)

GREGORCZYK-MAGA I.,KANIA M., DĄBROWSKA M., SAMBOROWSKA E., ŻEBER-LUBECKA N., KULECKA M., KLUPA T., The interplay between gingival crevicular fluid microbiome and metabolomic profile in intensively treated people with type 1 diabetes - a combined metagenomic/metabolomic approach cross-sectional study. Frontiers in Endocrinology (2024) 14: 1332406 (14 p.) DOI: 10.3389/fendo.2023.1332406 IF 5.2 (2022)

BARANOWSKI B., KRYSIŃSKA M., GRADOWSKI M., KINtaro: protein kinase-like database. BMC Research Notes (2024) 17(1): 50 (5 p.) DOI: 10.1186/s13104-024-06713-y IF 1.8 (2022)

JURGA J., SAMBOROWSKA E., ZIELIŃSKI J., OLEK R.A., Effects of Acute Beetroot Juice and Sodium Nitrate on Selected Blood Metabolites and Response to Transient Ischemia: A Crossover Randomized Clinical Trial. Journal of Nutrition (2024) 154(2): 491-497 DOI: 10.1016/j.tjnut.2023.12.018 IF 4.2 (2022)

JONAK K., SUPPANZ I., BENDER J., CHACIŃSKA A., WARSCHEID B., TOPF U., Ageing-dependent thiol oxidation reveals early oxidation of proteins with core proteostasis functions. Life Science Alliance (2024) 7(5): e202302300 (28 p.) DOI: 10.26508/lsa.202302300 IF 4.4 (2022)

KOSZNIK-KWAŚNICKA K., TOPKA G., MANTEJ J.,GRABOWSKI Ł., NECEL A., WĘGRZYN G., WĘGRZYN A., Propagation, Purification, and Characterization of Bacteriophages for Phage Therapy. Chapter 22 in: Bacteriophages. Methods in Molecular Biology, vol 2738. Humana, New York 2024. Ed. E. Tumban. ISBN 978-1-0716-3548-3, p. 357-400 DOI: 10.1007/978-1-0716-3549-0_22

JOŃCA J., PIRHONEN M., WALERON M.M., GAWOR J., MROZIK A., SMOKTUNOWICZ M., WALERON K., WALERON M., Comprehensive phenomic and genomic studies of the species, Pectobacterium cacticida and proposal for reclassification as Alcorniella cacticida comb. nov. Frontiers in Plant Science (2024) 15: 1323790 (16 p.) DOI: 10.3389/fpls.2024.1323790 IF 5.6 (2022)

CISEK A.A., SZYMAŃSKA E., ALEKSANDRZAK-PIEKARCZYK T., CUKROWSKA B., The Role of Methanogenic Archaea in Inflammatory Bowel Disease—A Review. Journal of Personalized Medicine (2024) 14(2): 196 (12 p.) DOI: 10.3390/jpm14020196 IF 3.4 (2022)

NEGRUTSKII B.S., PORUBLEVA L.V., MALINOWSKA A., NOVOSYLNA O.V., DADLEZ M., KNUDSEN CH.R., Understanding functions of eEF1 translation elongation factors beyond translation. A proteomic approach. Chapter 3 in: Advances in Protein Chemistry and Structural Biology, vol 138. Elsevier, 2024. Ed. R.Donev. ISBN 978-044319342-2, p. 67-99 DOI: 10.1016/bs.apcsb.2023.10.001

KRZYSZTOŃ M., SACHAROWSKI S.P., MANJUNATH V.H., MUTER K., BOKOTA G., WANG C., PLEWCZYŃSKI D., DOBISOVA T., ŚWIEŻEWSKI S., Dormancy heterogeneity among Arabidopsis thaliana seeds is linked to individual seed size. Plant Communications (2024) 5(2): 100732 (13 p.) DOI: 10.1016/j.xplc.2023.100732 IF 10.5 (2022)

ROSZCZENKO-JASIŃSKA P., GIEŁDOŃ A., MAZUR D., SPODZIEJA M., PLICHTA M., CZAPLEWSKI C., BAL W., JAGUSZTYN-KRYNICKA E.K., BARTOSIK D., Exploring the inhibitory potential of in silico-designed small peptides on Helicobacter pylori Hp0231 (DsbK), a periplasmic oxidoreductase involved in disulfide bond formation. Frontiers in Molecular Biosciences (2024) 10: 1335704 (11 p.) DOI: 10.3389/fmolb.2023.1335704 IF 5.0 (2022)

MAKSYMIUK K., SZUDZIK M., SAMBOROWSKA E., CHABOWSKI D., KONOP M.,UFNAL M., Mice, rats, and guinea pigs differ in FMOs expression and tissue concentration of TMAO, a gut bacteria-derived biomarker of cardiovascular and metabolic diseases. PLOS ONE (2024) 19(1): e0297474 (21 p.) DOI: 10.1371/journal.pone.0297474 IF 3.7 (2022)

JURCZAK P., ZHUKOV I., ORLIKOWSKA M., CZAPLEWSKA P., SIKORSKA E., Monitoring the interactions between POPG phospholipid bilayer and amyloid-forming protein human cystatin C. Does the bilayer influence the oligomeric state and structure of the protein? Biochimica et Biophysica Acta-Biomembranes (2024) 1866(3): 184285 (11 p.) DOI: 10.1016/j.bbamem.2024.184285 IF 3.4 (2022)

ŁABUZ J., BANAŚ A.K., ZGŁOBICKI P., BAŻANT A., SZTATELMAN O., GIZA A., LASOK H., PROCHWICZ A., KOZŁOWSKA-MROCZEK A., JANKOWSKA U., HERMANOWICZ P., Phototropin2 3'UTR overlaps with the AT5G58150 gene encoding an inactive RLK kinase. BMC Plant Biology (2024) 24(1): 55 (19 p.) DOI: 10.1186/s12870-024-04732-2 IF 5.3 (2022)

GÓRA M., KILISZEK M., MACIAK K., SALAMAGA H., ŁAZOWSKI K., BURZYŃSKA B., A novel microRNA differentially expressed between persistent and paroxysmal atrial fibrillation patients. Polish Archives of Internal Medicine (2024) 134(1): 16650 (3 p.) DOI: 10.20452/pamw.16650 IF 4.8 (2022)

GODWIN J., GOVINDASAMY M., NEDOUNSEJIAN K., MARCH E., HALTON R., BOURBOUSSE C., WOLFF L., FORT A., KRZYSZTOŃ M., LÓPEZ CORRALES J., ŚWIEŻEWSKI S., BARNECHE F., SCHUBERT D., FARRONA S., The UBP5 histone H2A deubiquitinase counteracts PRCs-mediated repression to regulate Arabidopsis development. Nature Communications (2024) 15(1): 667 ( 14 p.) DOI: 10.1038/s41467-023-44546-8 IF 16.6 (2022)

BOJARSKA J., ŁYCZKO K., MIECZKOWSKI A., Synthesis, Crystal Structure and Supramolecular Features of Novel 2,4-Diaminopyrimidine Salts. Crystals (2024) 14(2): 133 (13 p.) DOI: 10.3390/cryst14020133 IF 2.7 (2022)

WINIEWSKA-SZAJEWSKA M., PAPROCKI D., MARZEC E., POZNAŃSKI J., Effect of histidine protonation state on ligand binding at the ATP-binding site of human protein kinase CK2. Scientific Reports (2024) 14(1): 1463 (14 p.) DOI: 10.1038/s41598-024-51905-y IF 4.6 (2022)

KOWAL K., TKACZYK-WLIZŁO A., GAWOR J., ŚLASKA B., Molecular differences in mitochondrial genomes (mitogenomes) of dogs with recurrent and multiple tumours and their reference to the human mitochondrial genome. Annals of Animal Science (2024) 24(1): 89-97 DOI: 10.2478/aoas-2023-0067 IF 1.9 (2022)

OSTROWSKA J., SAMBOROWSKA E., JAWORSKI M., TOCZYŁOWSKA K., SZOSTAK-WĘGIEREK D., The Potential Role of SCFAs in Modulating Cardiometabolic Risk by Interacting with Adiposity Parameters and Diet. Nutrients (2024) 16(2): 266 (13 p.) DOI: 10.3390/nu16020266 IF 5.9 (2022)

CHMIEL P., KROTEWICZ M., SZUMERA-CIEĆKIEWICZ A., BARTNIK E., CZARNECKA A.M., RUTKOWSKI P., Review on Lymph Node Metastases, Sentinel Lymph Node Biopsy, and Lymphadenectomy in Sarcoma. Current Oncology (2024) 31(1): 307-323 DOI: 10.3390/curroncol31010020 IF 2.6 (2022)

VAN BELKUM M.J., ALEKSANDRZAK-PIEKARCZYK T., LAMER T., VEDERAS J.C., Lactococcus lactis mutants resistant to lactococcin A and garvicin Q reveal missense mutations in the sugar transport domain of the mannose phosphotransferase system. Microbiology Spectrum (2024) 12(1): e03130-23 (13 p.) DOI: 10.1128/spectrum.03130-23 IF 3.7 (2022)

SERAFIN P., SZELESZCZUK Ł., ZHUKOV I., SZŰCS E., GOMBOS D., STEFANUCCI A., MOLLICA A., PISKLAK D.M., KLECZKOWSKA P., Opioid/Dopamine Receptor Binding Studies, NMR and Molecular Dynamics Simulation of LENART01 Chimera, an Opioid-Bombesin-like Peptide. Molecules (2024) 29(1): 272 (16 p.) DOI: 10.3390/molecules29010272 IF 4.6 (2022)

MOGILNICKA I., JAWORSKA K., KOPER M., MAKSYMIUK K., SZUDZIK M., RADKIEWICZ M., CHABOWSKI D., UFNAL M., Hypertensive rats show increased renal excretion and decreased tissue concentrations of glycine betaine, a protective osmolyte with diuretic properties. PLOS ONE (2024) 19(1): e0294926 (14 p.) DOI: 10.1371/journal.pone.0294926 IF 3.7 (2022)

NAKONIECZNA A., TOPOLSKA-WOŚ A., ŁOBOCKA M., New bacteriophage-derived lysins, LysJ and LysF, with the potential to control Bacillus anthracis. Applied Microbiology and Biotechnology (2024) 108(1): 1-14 DOI: 10.1007/s00253-023-12839-z IF 5.0 (2022)

CISEK A.A., SZYMAŃSKA E., WIERZBICKA-RUCIŃSKA A., ALEKSANDRZAK-PIEKARCZYK T., CUKROWSKA B., Methanogenic Archaea in the Pediatric Inflammatory Bowel Disease in Relation to Disease Type and Activity. International Journal of Molecular Sciences (2024) 25(1): 673 (14 p.) DOI: 10.3390/ijms25010673 IF 5.6 (2022)

GOLIK P., RNA processing and degradation mechanisms shaping the mitochondrial transcriptome of budding yeasts. IUBMB Life (2024) 76(1): 38-52 DOI: 10.1002/iub.2779 IF 4.6 (2022)

JAKUBOWSKA M., WIŚNIEWSKA M.J., WENCEL A., WOJCIECHOWSKI C., GÓRA M., DUDEK K., CHWOJNOWSKI A., BURZYŃSKA B., PIJANOWSKA D.G., PLUTA K.D., Hollow fiber bioreactor with genetically modified hepatic cells as a model of biologically active function block of the bioartificial liver. Biocybernetics and Biomedical Engineering (2024) 44(1): 9-19 DOI: 10.1016/j.bbe.2023.11.003 IF 6.4 (2022)

BELYKH A., HAWRO I., KOLCZYŃSKA-MATYSIAK K., LOZA-VALDES A., MIECZKOWSKI A., SUMARA G., Triazolo[4,5-d]pyrimidin-5-amines based ERK3 inhibitors fail to demonstrate selective effects on adipocyte function. Archives of Biochemistry and Biophysics (2024) 751: 109825 (13 p.) DOI: 10.1016/j.abb.2023.109825 IF 3.9 (2022)

KRAWCZYK P.S., TUDEK A., MROCZEK S., DZIEMBOWSKI A., Transcriptome-Wide Analysis of mRNA Adenylation Status in Yeast Using Nanopore Sequencing. Chapter 12 in: Deadenylation. Methods in Molecular Biology, vol 2723. Humana, New York 2024. Ed. E.Valkov, A.C.Goldstrohm. ISBN 978-1-0716-3480-6, 2024, p.193-214 DOI: 10.1007/978-1-0716-3481-3_12

STĘPIEŃ K., SKONECZNA A., KULA-MAXIMENKO M., JURCZYK Ł., MOŁOŃ M., Disorders in the CMG helicase complex increase the proliferative capacity and delay chronological aging of budding yeast. Biochimica et Biophysica Acta-Molecular Cell Research (2024) 1871(1): 119621 (14 p.) DOI: 10.1016/j.bbamcr.2023.119621 IF 5.1 (2022)