Publikacje - Instytut Biochemii i Biofizyki Polskiej Akademii Nauk

KARŁOWICZ A., DUBIEL A.B., CZERWIŃSKA J., BLEDEA A., PURZYCKI P., GRZELEWSKA M., MCAULEY R.J., SZCZĘSNY R.J., BRZUSKA G., KRÓL E., SZCZĘSNY B., SZYMAŃSKI M.R., In vitro reconstitution reveals a key role of human mitochondrial EXOG in RNA primer processing. Nucleic Acids Research (2022) 50(14): 7991–8007 DOI: 10.1093/nar/gkac581 IF 19.160 (2021)

KOŹMIŃSKI P., NIEDZIAŁEK D., WIECZOREK G., HALIK P.K., CZARNECKA K., ROGUT A., CHEDA Ł., ROGULSKI Z., SZYMAŃSKI P., GNIAZDOWSKA E., New Imaging Modality of COVID-19 Pneumonia Developed on the Basis of Alzheimer’s Disease Research. International Journal of Molecular Sciences (2022) 23(15): 8405 (17 p.) DOI: 10.3390/ijms23158405 IF 6.208 (2021)

KULIK T., MOLCAN T., FIEDOROWICZ G., VAN DIEPENINGEN A.D., STAKHEEV A., TREDER K., OLSZEWSKI J., BILSKA K., BEYER M., PASQUALI M., STENGLEIN S., Whole-genome single nucleotide polymorphism analysis for typing the pandemic pathogen Fusarium graminearum sensu stricto. Frontiers in Microbiology (2022) 13: 885978 (9 p.) DOI: 10.3389/fmicb.2022.885978 IF 6.064 (2021)

DIETRICH M.A., ADAMEK M., TEITGE F., TEICH L., JUNG-SCHROERS V., MALINOWSKA A., ŚWIDERSKA B., RAKUS K., KODZIK N., CHADZIŃSKA M., KAROL H., LISZEWSKA E., CIERESZKO A., Proteomic analysis of carp seminal plasma provides insights into the immune response to bacterial infection of the male reproductive system. Fish and Shellfish Immunology (2022) 127: 822-835 DOI: 10.1016/j.fsi.2022.07.019 IF 4.622 (2021)

KACZMARSKA Z., CZARNOCKI-CIECIURA M., GÓRECKA-MINAKOWSKA K.M., WINGO R.J., JACKIEWICZ J., ZAJKO W., POZNAŃSKI J., RAWSKI M., GRANT T., PETERS J.E., NOWOTNY M., Structural basis of transposon end recognition explains central features of Tn7 transposition systems. Molecular Cell (2022) 82(14): 2618-2632.e7 DOI: 10.1016/j.molcel.2022.05.005 IF 19.328 (2021)

DAS A., THAPA P., SANTIAGO U., SHANMUGAM N., BANASIAK K., DĄBROWSKA K., NOLTE H., SZULC NATALIA A., GATHUNGU R.M., CYSEWSKI D., KRÜGER M., DADLEZ M., NOWOTNY M., CAMACHO C.J., HOPPE T., POKRZYWA W., A heterotypic assembly mechanism regulates CHIP E3 ligase activity. EMBO Journal (2022) 41(15): e109566 ( 24 p.) DOI: 10.15252/embj.2021109566 IF 14.012 (2021)

BRYK-WIĄZANIA A.H., CYSEWSKI D., OCŁOŃ E., UNDAS A., Mass-spectrometric identification of oxidative modifications in plasma-purified plasminogen: Association with hypofibrinolysis in patients with acute pulmonary embolism. Biochemical and Biophysical Research Communications (2022) 621: 53-58 DOI: 10.1016/j.bbrc.2022.06.063 IF 3.322 (2021)

KOBRZYCKA A.T., STANKIEWICZ A.M., GOŚCIK J., GÓRA M., BURZYŃSKA B., IWANICKA-NOWICKA R., PIERZCHAŁA-KOZIEC K., WIECZOREK M., Hypothalamic Neurochemical Changes in Long-Term Recovered Bilateral Subdiaphragmatic Vagotomized Rats. Frontiers in Behavioral Neuroscience (2022) 16: 869526 (8 p.) DOI: 10.3389/fnbeh.2022.869526 IF 3.617 (2021)

HEMMERLE M., SENGER B., KUCHARCZYK R., BECKER H.D., Visualizing Mitochondrial Importability of a Protein Using the Yeast Bi-Genomic Mitochondrial-Split-GFP Strain and an Ordinary Fluorescence Microscope. Chapter 16 in: Mitochondria. Methods and Protocols, Methods in Molecular Biology, vol 2497. Humana New York, NY. Ed. N. Tomar. ISBN 978-1-0716-2308-4, 2022, p. 255-267 DOI: 10.1007/978-1-0716-2309-1_16

TRIBOUILLARD-TANVIER D., DAUTANT A., GODARD F., PANJA CH., DI RAGO J.-P., KUCHARCZYK R., Creation of Yeast Models for Evaluating the Pathogenicity of Mutations in the Human Mitochondrial Gene MT-ATP6 and Discovering Therapeutic Molecules. Chapter 14 in: Mitochondria. Methods and Protocols, Methods in Molecular Biology, vol 2497. Humana New York, NY. Ed. N. Tomar. ISBN 978-1-0716-2308-4, 2022, p. 221-242 DOI: 10.1007/978-1-0716-2309-1_14

TOMA A., DOS SANTOS C., BURZYŃSKA B., GÓRA M., KILISZEK M., STICKLE N., KIRSTEN H., KOSYAKOVSKY L.B., WANG B., VAN DIEPEN S., EPELMAN S., SZEKELY Y., MARSHALL J.C., BILLIA F., LAWLER P.R., Diversity in the Expressed Genomic Host Response to Myocardial Infarction. Circulation Research (2022) 131(1): 106-108 DOI: 10.1161/CIRCRESAHA.121.318391 IF 23.213 (2021)

DZIEMBOWSKI M., BIALIK R.J., The Remotely and Directly Obtained Results of Glaciological Studies on King George Island: A Review. Remote Sensing (2022) 14(12): 2736 (36 p.) DOI: 10.3390/rs14122736 IF 5.349 (2021)

KRZYWIŃSKA E., SZYMAŃSKA K.P., DOBROWOLSKA G., Inhibition of SnRK2 Kinases by Type 2C Protein Phosphatases. Chapter 2 in: Abscisic Acid. Methods and Protocols, Methods in Molecular Biology, vol 2462, Humana, New York NY. Ed. T.Yoshida. ISBN 978-1-0716-2155-4, 2022, p.17-30 DOI: 10.1007/978-1-0716-2156-1_2

FRĄCZYK T., CIEPLAK P., Neglected N-Truncated Amyloid-β Peptide and Its Mixed Cu-Zn Complexes. Protein Journal (2022) 41(3): 361-368 DOI: 10.1007/s10930-022-10056-7 IF 4.000 (2021)

GRECH-BARAN M., WITEK K., POZNAŃSKI J., GRUPA-URBAŃSKA A., MALINOWSKI T., LICHOCKA M., JONES J.DG., HENNIG J., The Ry_sto immune receptor recognises a broadly conserved feature of potyviral coat proteins. New Phytologist (2022) 235(3): 1179–1195 DOI: 10.1111/nph.18183 IF 10.323 (2021)

MACIEJEWSKA K., CZARNECKA K., KRĘCISZ P., NIEDZIAŁEK D., WIECZOREK G., SKIBIŃSKI R., SZYMAŃSKI P., Novel Cyclopentaquinoline and Acridine Analogs as Multifunctional, Potent Drug Candidates in Alzheimer's Disease. International Journal of Molecular Sciences (2022) 23(11): 5876 (22 p.) DOI: 10.3390/ijms23115876 IF 6.208 (2021)

JOPA S., WÓJCIK J., EJCHART A., NOWAKOWSKI M., NMR studies of inclusion complexes: naphthalene and natural cyclodextrins. Physical Chemistry Chemical Physics (2022) 24(22): 13690-13697 DOI: 10.1039/d2cp01152b IF 3.945 (2021)

RYGIEL A.M., UNGER L.S., SÖRGEL F.L., MASSON E., MATSUMOTO R., EWERS M., CHEN J-M., BUGERT P., BUSCAIL L., GAMBIN T., ORACZ G., WINIEWSKA-SZAJEWSKA M., MIANOWSKA A., POZNAŃSKI J., KOSIŃSKA J., STAWIŃSKI P., PŁOSKI R., KOZIEL D., GLUSZEK S., LAUMEN H., LINDGREN F., LÖHR J.M., OREKHOVA A., REBOURS V., ROSENDAHL J., PÁRNICZKY A., HEGYI P., SASAKI A., KATAOKA F., TANAKA Y., HAMADA S., SAHIN-TÓTH M., HEGYI E., FÉREC C., MASAMUNE A., WITT H., Variants in the pancreatic CUB and zona pellucida-like domains 1 (CUZD1) gene in early-onset chronic pancreatitis - A possible new susceptibility gene. Pancreatology (2022) 22(5): 564-571 DOI: 10.1016/j.pan.2022.04.015 IF 3.977 (2021)

DMUCHOWSKI W., BRĄGOSZEWSKA P., GOZDOWSKI D., BACZEWSKA-DĄBROWSKA A.B., CHOJNACKI T., JÓŹWIAK A., ŚWIEŻEWSKA E., SUWARA I., GWOREK B., Strategies of urban trees for mitigating salt stress: a case study of eight plant species. Trees-Structure and Function (2022) 36(3): 899-914 DOI: 10.1007/s00468-020-02044-0 IF 2.888 (2021)

JURKIEWICZ A., GRACZYK D., MAP kinases are involved in RNA polymerase III regulation upon LPS treatment in macrophages. Gene (2022) 831: 146548 (8 p.) DOI: 10.1016/j.gene.2022.146548 IF 3.913 (2021)

BISELLO G., KUŚMIERSKA K., VERBEEK M.V., SYKUT-CEGIELSKA J., WILLEMSEN M.A.A.P., WEVERS R.A., SZYMAŃSKA K., POZNAŃSKI J., DROŻAK J., WERTHEIM-TYSAROWSKA K., RYGIEL A.M., BERTOLDI M., The novel P330L pathogenic variant of aromatic amino acid decarboxylase maps on the catalytic flexible loop underlying its crucial role. Cellular and Molecular Life Sciences (2022) 79(6): 305 (16 p.) DOI: 10.1007/s00018-022-04343-w IF 9.207 (2021)

KOSZNIK-KWAŚNICKA K., STASIŁOJĆ M., GRABOWSKI Ł., ZDROJEWSKA K., WĘGRZYN G., WĘGRZYN A., Efficacy and safety of phage therapy against Salmonella enterica serovars Typhimurium and Enteritidis estimated by using a battery of in vitro tests and the Galleria mellonella animal model. Microbiological Research (2022) 261: 127052 (15 p.) DOI: 10.1016/j.micres.2022.127052 IF 5.07 (2021)

DMOWSKI M., MAKIEŁA-DZBEŃSKA K., JĘDRYCHOWSKA M., DENKIEWICZ-KRUK M., FIJAŁKOWSKA I.J., Mutation spectrum data for Saccharomyces cerevisiae psf1-1 pol2-M644G mutants. Data in Brief (2022) 42: 108223 (6 p.) DOI: 10.1016/j.dib.2022.108223 IF -

GROCHOWSKA J., CZERWIŃSKA J., BOROWSKI Ł.S., SZCZĘSNY R.J., Mitochondrial RNA, a new trigger of the innate immune system. Wiley Interdisciplinary Reviews-RNA (2022) 13(3): e1690 (21 p.) DOI: 10.1002/wrna.1690 IF 9.349 (2021)

BORSARI C., KELES E., McPHAIL J.A., SCHAEFER A., SRIRAMARATNAM R., GOCH W., SCHAEFER T., DE PASCALE M., BAL W., GSTAIGER M., BURKE J.E., WYMANN M.P., Covalent Proximity Scanning of a Distal Cysteine to Target PI3Kα. Journal of the American Chemical Society (2022) 144(14): 6326-6342 DOI: 10.1021/jacs.1c13568 IF 16.383 (2021)

IWAŃSKA O., LATOCH P., SUCHORA M., PIDEK I.A., HUBER M., BUBAK I., KOPIK N., KOVALENKO M., GĄSIOROWSKI M., ARMACHE J-P., STAROSTA A.L., Lake microbiome and trophy fluctuations of the ancient hemp rettery. Scientific Reports (2022) 12: 8846 (16 p.) DOI: 10.1038/s41598-022-12761-w IF 4.996 (2021)

SAŁAŃSKI P., KOWALCZYK M., BARDOWSKI J.K., SZCZEPANKOWSKA A.K., Health-Promoting Nature of Lactococcus lactis IBB109 and Lactococcus lactis IBB417 Strains Exhibiting Proliferation Inhibition and Stimulation of Interleukin-18 Expression in Colorectal Cancer Cells. Frontiers in Microbiology (2022) 13: 822912 (17 p.) DOI: 10.3389/fmicb.2022.822912 IF 6.064 (2021)

OOSTHUIZEN W.CH.,PISTORIUS P.A., KORCZAK-ABSHIRE M., HINKE J.T., SANTOS M., LOWTHER A.D., The foraging behavior of nonbreeding Adélie penguins in the western Antarctic Peninsula during the breeding season. Ecosphere (2022) 13(5): e4090 (16 p.) DOI: 10.1002/ecs2.4090 IF 3.593 (2021)

WÓJCIK-DŁUGOBORSKA K.A., OSIŃSKA M., BIALIK R.J., The Impact of Glacial Suspension Color on the Relationship Between Its Properties and Marine Water Spectral Reflectance. IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing (2022) 15: 3258-3268 DOI: 10.1109/JSTARS.2022.3166398 IF 4.715 (2021)

ZNÓJ A., GRZESIAK J., GAWOR J., GROMADKA R., CHWEDORZEWSKA K.J., Highly specialized bacterial communities within three distinct rhizocompartments of Antarctic hairgrass (Deschampsia antarctica Desv.) Polar Biology (2022) 45(5): 833 - 844 DOI: 10.1007/s00300-022-03027-2 IF 2.198 (2021)

CZARNECKI J., CHAPKAUSKAITSE E., BOS J., SENTKOWSKA D., WAWRZYNIAK P., WYSZYŃSKA A., SZUPLEWSKA M., BARTOSIK D., Differential Localization and Functional Specialization of parS Centromere-Like Sites in repABC Replicons of Alphaproteobacteria. Applied and Environmental Microbiology (2022) 88(8): e0020722 (12 p.) DOI: 10.1128/aem.00207-22 IF 5.005 (2021)

BAJER A., BECK A., BECK R., BEHNKE J.M., DWUŻNIK-SZAREK D., EICHENBERGER R.M., FARKAS R., FUEHRER H-P., HEDDERGOTT M., JOKELAINEN P., LESCHNIK M., OBORINA V., PAULAUSKAS A., RADZIJEVSKAJA J., RANKA R., SCHNYDER M., SPRINGER A., STRUBE CH., TOŁKACZ K., WALOCHNIK J., Babesiosis in Southeastern, Central and Northeastern Europe: An Emerging and Re-Emerging Tick-Borne Disease of Humans and Animals. Microorganisms (2022) 10(5): 945 (41 p.) DOI: 10.3390/microorganisms10050945 IF 4.926 (2021)

KAMIŃSKA J., SOCZEWKA P., RZEPNIKOWSKA W., ŻOŁĄDEK T., Yeast as a Model to Find New Drugs and Drug Targets for VPS13-Dependent Neurodegenerative Diseases. International Journal of Molecular Sciences (2022) 23(9): 5106 (24 p.) DOI: 10.3390/ijms23095106 IF 6.208 (2021)

GAWOR A., GAJEWSKI Z., PĄCZEK L., CZARKOWSKA-PĄCZEK B., KONOPKA A., WRYK G., BULSKA E., Fluorine-Containing Drug Administration in Rats Results in Fluorination of Selected Proteins in Liver and Brain Tissue. International Journal of Molecular Sciences (2022) 23(8): 4202 (11 p.) DOI: 10.3390/ijms23084202 IF 6.208 (2021)

WILAMOWSKA A., KOBLOWSKA M., MATLAKOWSKA R., Postdiagenetic Changes in Kerogen Properties and Type by Bacterial Oxidation and Dehydrogenation. Molecules (2022) 27(8): 2408 (17 p.) DOI: 10.3390/molecules27082408 IF 4.927 (2021)

MOSSAKOWSKA B.J., SHAHMORADI-GHAHE S., CYSEWSKI D., FABISIEWICZ A., TUDEK B., SIEDLECKI J.A., Mechanisms of Resistance to Photodynamic Therapy (PDT) in Vulvar Cancer. International Journal of Molecular Sciences (2022) 23(8): 4117 (19 p.) DOI: 10.3390/ijms23084117 IF 6.208 (2021)

MOSZCZUK B., KRATA N., RUDNICKI W., FORONCEWICZ B., CYSEWSKI D., PĄCZEK L., KALETA B., MUCHA K., Osteopontin-A Potential Biomarker for IgA Nephropathy: Machine Learning Application. Biomedicines (2022) 10(4): 734 (15 p.) DOI: 10.3390/biomedicines10040734 IF 4.757 (2021)

ŁABĘDZKA-DMOCH K., RAŻEW M., GAPIŃSKA M., PIĄTKOWSKI J., KOLONDRA A., SALMONOWICZ H., WENDA J.M., NOWOTNY M., GOLIK P., The Pet127 protein is a mitochondrial 5'-to-3' exoribonuclease from the PD-(D/E)XK superfamily involved in RNA maturation and intron degradation in yeasts. RNA (2022) 28(5): 711 - 728 DOI: 10.1261/rna.079083.121 IF 5.636 (2021)

ŠVEC P., KRÁLOVÁ S., STAŇKOVÁ E., HOLOCHOVÁ P., SEDLÁŘ K., KOUDELKOVÁ S., KRSEK D., GRZESIAK J., ŠEDO O., VÁCZI P., URVASHI,GUPTA V., SOOD U., LAL R., KORPOLE S., SEDLÁČEK I., Pedobacter fastidiosus sp. nov., isolated from glacial habitats of maritime Antarctica. International Journal of Systematic and Evolutionary Microbiology (2022) 72(4): 005309 (9 p.) DOI: 10.1099/ijsem.0.005309 IF 2.689 (2021)

MUCHA K., STAROS R., FORONCEWICZ B., ZIARKIEWICZ-WRÓBLEWSKA B., KOSIERADZKI M., NAZAREWSKI S., NAUMNIK B., RASZEJA-WYSZOMIRSKA J.,ZIENIEWICZ K., PĄCZEK L., Comparison of Post-Transplantation Lymphoproliferative Disorder Risk and Prognostic Factors between Kidney and Liver Transplant Recipients. Cancers (2022) 14(8): 1953 (13 p.) DOI: 10.3390/cancers14081953 IF 6.575 (2021)

CZMIL A., WROŃSKI M., CZMIL S., SOCHACKA-PIETAL M., CMIL M., GAWOR J., WOŁKOWICZ T., PLEWCZYŃSKI D., STRZAŁKA D., PIĘTAL M., NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology. PeerJ (2022) 10: e13056 (13 p.) DOI: 10.7717/peerj.13056 IF 3.061 (2021)

WĘGRZYN A., KRYSIAK M., KULIK A., GIECZEWSKA K.B., MAZUR R., STN7 Kinase Is Essential for Arabidopsis thaliana Fitness under Prolonged Darkness but Not under Dark-Chilling Conditions. International Journal of Molecular Sciences (2022) 23(9): 4531 (18 p.) DOI: 10.3390/ijms23094531 IF 6.208 (2021)

ZARĘBA-KOZIOŁ M., BURDUKIEWICZ M., WYSŁOUCH-CIESZYŃSKA A., Intracellular Protein S-Nitrosylation—A Cells Response to Extracellular S100B and RAGE Receptor. Biomolecules (2022) 12(5): 613 (23 p.) DOI: 10.3390/biom12050613 IF 6.064 (2021)

SWATLER J., TUROS-KORGUL L., BREWIŃSKA-OLCHOWIK M., DE BIASI S., DUDKA W., LE B.V., KOMINEK A., CYRANOWSKI S., PILANC P., MOHAMMADI E., CYSEWSKI D., KOZŁOWSKA E., GRABOWSKA-PYRZEWICZ W., WOJDA U., BASAK G., MIECZKOWSKI J., SKORSKI T., COSSARIZZA A., PIWOCKA K., 4-1BBL-containing leukemic extracellular vesicles promote immunosuppressive effector regulatory T cells. Blood Advances (2022) 6(6): 1879-1894 DOI: 10.1182/bloodadvances.2021006195 IF 7.647 (2021)

ORZECHOWSKA K., DOBRZYŃ K., KIEŻUN M., MALINOWSKA A., ŚWIDERSKA B., KAMIŃSKI T., SMOLIŃSKA N., Chemerin Effect on the Endometrial Proteome of the Domestic Pig during Implantation Obtained by LC-MS/MS Analysis. Cells (2022) 11(7): 1161 (16 p.) DOI: 10.3390/cells11071161 IF 7.666 (2021)

PODOBAS E.I., GUTOWSKA-OWSIAK D., MORETTI S., POZNAŃSKI J., KULIŃCZAK M., GRYNBERG M., GRUCA A., BONNA A., PŁONKA D., OGG G., BAL W., Ni²⁺-Assisted Hydrolysis May Affect the Human Proteome; Filaggrin Degradation Ex Vivo as an Example of Possible Consequences. Frontiers in Molecular Biosciences (2022) 9: 828674 (16 p.) DOI: 10.3389/fmolb.2022.828674 IF 6.113 (2021)

DASZCZYŃSKA A., KRUCOŃ T., STASIUK R., KOBLOWSKA M., MATLAKOWSKA R., Lanthanide-Dependent Methanol Metabolism of a Proteobacteria-Dominated Community in a Light Lanthanide-Rich Deep Environment. International Journal of Molecular Sciences (2022) 23(7): 3947 (15 p.) DOI: 10.3390/ijms23073947 IF 6.208 (2021)

ASHRAF K.U., NYGAARD R., VICKERY O.N., ERRAMILLI S.K., HERRERA C.M., McCONVILLE, T.H., PETROU V.I., GIACOMETTI S.I., DUFRISNE, M.B.,NOSOL K., ZINKLE A.P., GRAHAM C.L.B., LOUKERIS M., KLOSS B., SKORUPIŃSKA-TUDEK K., ŚWIEŻEWSKA E., ROPER D.I., CLARKE O.B.,UHLEMANN A-C., KOSSIAKOFF A.A., TRENT M.S., STANSFELD P.J., MANCIA F., Structural basis of lipopolysaccharide maturation by the O-antigen ligase. Nature (2022) 604(7905): 371–376 DOI: 10.1038/s41586-022-04555-x IF 69.504 (2021)

DA CUNHA M. F.,PRANKE I., SASSI A., SCHREIWEIS CH., MORICEAU S., VIDOVIC D., HATTON A., CARLON S.M., CRESTE G., BERHAL F., PRESTAT G., FREUND R., ODOLCZYK N., JAIS J.P., GRAVIER-PELLETIER CH., ZIELENKIEWICZ P., JULLIEN V., HINZPETER A., OURY F., EDELMAN A., SERMET-GAUDELUS I., Systemic bis-phosphinic acid derivative restores chloride transport in Cystic Fibrosis mice. Scientific Reports (2022) 12(1): 6132 (9p.) DOI: 10.1038/s41598-022-09678-9 IF 4.996 (2021)

BEDNAREK A., CENA A., IZAK W., BIGOS J., ŁOBOCKA M., Functional Dissection of P1 Bacteriophage Holin-like Proteins Reveals the Biological Sense of P1 Lytic System Complexity. International Journal of Molecular Sciences (2022) 23(8): 4231 (21 p.) DOI: 10.3390/ijms23084231 IF 6.208 (2021)