Publikacje - Instytut Biochemii i Biofizyki Polskiej Akademii Nauk

ŻYCHOWSKA M., BAKUŁA Z., DECEWICZ P., HRYNCEWICZ-GWÓŹDŹ A., DYLĄG M., JANKOWSKA-KONSUR A., GAWOR J., GROMADKA R., ŻACZEK A., The Skin mycobiome of patients with atopic dermatitis and healthy volunteers: a case-control study. Experimental Dermatology (2025) 34(3): e70085 (13 p.) DOI: 10.1111/exd.70085 IF 3.1 (2024)

SZCZEPANKOWSKA A.K., CUKROWSKA B., ALEKSANDRZAK-PIEKARCZYK T., Complete genome sequencing and probiotic trait analysis of Lacticaseibacillus rhamnosus LR110, a human stool isolate from the NORDBIOTIC collection. Microbiology Resource Announcements (2025) 14(3): e0111624 (3p.) DOI: 10.1128/mra.01116-24 IF 0.6 (2024)

BLAZIUS B., TROOST J.P., KOPP J.B., PAREKH R.S., GILLESPIE B., AYOUB I., KALLASH M., [...],MUCHA K., ET AL. Clinical decision-making about immunosuppressive treatment in focal segmental glomerulosclerosis. Kidney Medicine (2025) 7(4): 100975 (11p.) DOI: 10.1016/j.xkme.2025.100975 IF 3.4 (2024)

KOPACZ A., KLÓSKA D., BAR A., TARGOSZ-KORECKA M., CYSEWSKI D., AWSIUK K., PIECHOTA-POLAŃCZYK A., CICHOŃ M., CHŁOPICKI S., JÓZKOWICZ A., GROCHOT-PRZĘCZEK A., Endothelial miR-34a deletion guards against aneurysm development despite endothelial dysfunction. Biochimica et Biophysica Acta - Molecular Basis of Disease (2025) 1871: 167812 (16 p.) DOI: 10.1016/j.bbadis.2025.167812 IF 4.2 (2024)

CIEPLAK-ROTOWSKA M.K., DADLEZ M., NIEDŹWIECKA A., Exploring the CNOT1(800–999) HEAT domain and its interactions with Tristetraprolin (TTP) as revealed by hydrogen/deuterium exchange mass spectrometry. Biomolecules (2025) 15(3): 403 (24 p.) DOI: 10.3390/biom15030403 IF 4.8 (2024)

KOMAROWSKA K., FUDALA K., DZIEMBOWSKI M., HAGGE A., BIALIK R., Population status of sympatrically breeding Skuas (Catharacta spp.) at Admiralty Bay, King George Island, Antarctica: A case report for 2020-2024. Biology-Basel (2025) 14(3): 305 (18 p.) DOI: 10.3390/biology14030305 IF 3.5 (2024)

BUGAJEWSKI M., ANGERHOEFER N., PĄCZEK L., KALETA B., Lentinula edodes as a source of bioactive compounds with therapeutical potential in intestinal inflammation and colorectal cancer. International Journal of Molecular Sciences (2025) 26(7): 3320 (24 p.) DOI: 10.3390/ijms26073320 IF 4.9 (2024)

HOFFMAN-SOMMER M., PIŁKA N., ANIELSKA-MAZUR A., NOWAKOWSKA J., KOZIERADZKA-KISZKURNO M., PĄCZKOWSKI C., JEMIOŁA-RZEMIŃSKA M., STECZKIEWICZ K., DAGDAS Y., ŚWIEŻEWSKA E., The TRAPPC8/TRS85 subunit of the Arabidopsis TRAPPIII tethering complex regulates endoplasmic reticulum function and autophagy. Plant Physiology (2025) 197(3): kiaf042 DOI: 10.1093/plphys/kiaf042 IF 6.9 (2024)

PETFALSKI E., WINZ M.L., GRELEWSKA-NOWOTKO K., TUROWSKI T.W., Multiple mechanisms of termination modulate the dynamics of RNAPI transcription. Cell Reports (2025) 44(3): 115325 (23 p.) DOI: 10.1016/j.celrep.2025.115325 IF 6.9 (2024)

JENNINGS S.J.A., HAMBREY M.J., GLASSER N.F., HUBBARD B., JAMES T.D., MIDGLEY G.N., Structural characteristics of flow units in Svalbard valley glaciers and their utility for investigating ice-dynamic changes over centennial timescales. Journal of Glaciology (2025) 71: e26 (18 p.) DOI: 10.1017/jog.2024.103 IF 2.6 (2024)

KYRYCHENKO A., KOVALENKO H.O., Prospects of liposomes application in agriculture. Mikrobiolohichnyi Zhurnal / Microbiological Journal (2025) 87(1): 72-82 DOI: 10.15407/microbiolj87.01.072 IF - (2024)

GAWOR J., ŻUCHNIEWICZ K., SAAVEDRA OJEDA M., BERES B.S., KIEDROWSKA M., WRÓBEL-PAWELCZYK I., KOZIŃSKA A., GROMADKA R., MUSSER M.J., SITKIEWICZ I., KERN-ZDANOWICZ I., ICESp1109, a novel hybrid integrative conjugative element of macrolide-resistant Streptococcus pyogenes serotype M77 collected between 2003 and 2017 in Poland. Journal of Infectious Diseases (2025) 231 (3): e521-e530 DOI: 10.1093/infdis/jiae473 IF 4.5 (2024)

WINIEWSKA-SZAJEWSKA M., POZNAŃSKI J., Differential scanning fluorimetry followed by microscale thermophoresis and/or isothermal titration calorimetry as an efficient tool for ligand screening. Biophysical Reviews (2025) 17: 199-223 DOI: 10.1007/s12551-025-01280-3 IF 3.7 (2024)

MAASSEN A., STECIUK J., WILGA M., SZURMAK J., GARBICZ D., SARNOWSKA E., SARNOWSKI T.J., SWI/SNF-type complexes–transcription factor interplay: a key regulatory interaction. Cellular & Molecular Biology Letters (2025) 30: 30 (27 p.) DOI: 10.1186/s11658-025-00704-y IF 10.2 (2024)

OZHELVACI F., STECZKIEWICZ K., α/β Hydrolases: Toward Unraveling Entangled Classification. Proteins: Structure, Function, and Bioinformatics (2025) 93: 855-870 DOI: 10.1002/prot.26776 IF 2.8 (2024)

WRONA M., ZINSMEISTER J., KRZYSZTOŃ M., VILLETTE C., ZUMSTEG J., MERCIER P., NEVEU M., SACHAROWSKI S., ARCHACKI R., COLLET B., BUITINK J., SCHALLER H., ŚWIEŻEWSKI S., YATUSEVICH R., The BRAHMA-associated SWI/SNF chromatin remodeling complex controls Arabidopsis seed quality and physiology. Plant Physiology (2025) 197(1): kiae642 (16 p.) DOI: 10.1093/plphys/kiae642 IF 6.9 (2024)

PLENZLER J., BUDZIK T., WÓJCIK-DŁUGOBORSKA K.A., BIALIK R., Daily weather data from Central and Eastern King George Island (West Antarctica) for 2018–2023. Geoscience Data Journal (2025) 12: e287 (14 p.) DOI: 10.1002/gdj3.287 IF 2.4 (2024)

KHARCHENKO V., AL-HARTHI S., EJCHART A., JAREMKO Ł., Pitfalls in measurements of R₁ relaxation rates of protein backbone 15^N nuclei. Journal of Biomolecular NMR (2025) 79(1): 1–14 DOI: 10.1007/s10858-024-00449-4 IF 1.9 (2024)

STECZKIEWICZ K., KOSSAKOWSKI A., JANIK S., MUSZEWSKA A., Low-complexity regions in fungi display functional groups and are depleted in positively charged amino acids. NAR Genomics and Bioinformatics (2025) 7(1): lqaf014 (16 p.) DOI: 10.1093/nargab/lqaf014 IF 2.8 (2024)

SZCZEPANKOWSKA A.K., CUKROWSKA B., ALEKSANDRZAK-PIEKARCZYK T., Complete genome sequence of Bifidobacterium animalis subsp. lactis BI040, a probiotic strain with multiple health benefits from the NORDBIOTIC collection. Microbiology Resource Announcements (2025) 14(2): e01117-24 (3 p.) DOI: 10.1128/mra.01117-24 IF 0.6 (2024)

BOGUSŁAWSKA J., RAKHMETULLINA A., GRZANKA M., BIAŁAS A., RYBICKA B., ŻYCKA-KRZESIŃSKA J., MOLCAN T., ZIELENKIEWICZ P., PĄCZEK L., PIEKIEŁKO-WITKOWSKA A. miR395e from Manihot esculenta Decreases Expression of PD-L1 in Renal Cancer: A Preliminary Study. Genes (2025) 16(3): 293 (11 p.) DOI: 10.3390/genes16030293 IF 2.8 (2024)

KROTEWICZ M., CZARNECKA A.M., BŁOŃSKI P., ŚLEDŹ J., SZOSTAKOWSKI B., SZUMERA-CIEĆKIEWICZ A., BARTNIK E., RUTKOWSKI P., Distal and proximal epithelioid sarcoma - differences in diagnosis and similarities in treatment. Oncology in Clinical Practice (2025) 21(1): 60-70 DOI: 10.5603/ocp.99119 IF 0.4 (2024)

CZARNECKA A.M., CHMIEL P., SOBCZUK P., BARTNIK E., SPAŁEK M.J., SZUMERA-CIEĆKIEWICZ A., ZDZIENICKI M., FALKOWSKI S., RUTKOWSKI P., Malignant peripheral nerve sheath tumor-from genetics to multidisciplinary treatment. Oncology in Clinical Practice (2025) 21(1): 39-59 DOI: 10.5603/ocp.98716 IF 0.4 (2024)

BARUA D., PŁECHA M., MUSZEWSKA A., Non-dikarya fungi share the TORC1 pathway with animals, not with Saccharomyces cerevisiae. Scientific Reports (2025) 15: 5926 (14 p.) DOI: 10.1038/s41598-025-89635-4 IF 3.9 (2024)

CHARMANT O., GRUCHOTA J., ARNAIZ O., NOWAK K.P., MOISAN N., ZANGARELLI C., BÉTERMIER M., ANIELSKA-MAZUR A., LEGROS V., CHEVREUX G., NOWAK J.K., DUHARCOURT S., The PIWI-interacting protein Gtsf1 controls the selective degradation of small RNAs in Paramecium. Nucleic Acids Research (2025) 53: gkae1055 (21 p.) DOI: 10.1093/nar/gkae1055 IF 13.1 (2024)

KURUCAY N.H., YAZICI Z., BAYRAKAL V., MUFTUOGLU B., OZAN E., TAMER C., GOZEL S., BARRY G., IGDE M., OKUR‑GUMUSOVA S., ALBAYRAK H., ELHAG E.A., BASKIN H., A surrogate in vitro experimental model for off‑label drug repurposing: inhibitory effect of montelukast on bovine respiratory syncytial virus replication. Virology Journal (2025) 22: 38 (12 p.) DOI: 10.1186/s12985-025-02647-4 IF 3.8 (2024)

NA CH., KIM M., KIM G., LIN Y., LEE Y-H., BAL W., NAM E., LIM M.H., Distinct Aggregation Behavior of N‑Terminally Truncated Aβ₄₋₄₂Over Aβ₁₋₄₂ in the Presence of Zn(II). ACS Chemical Neuroscience (2025) 16(4) : 732-744 DOI: 10.1021/acschemneuro.4c00831 IF 3.9 (2024)

BRESSON S., SANI E., ARMATOWSKA A., DIXON C., TOLLERVEY D., The transcriptional and translational landscape of HCoV-OC43 infection. PLoS Pathogens (2025) 21(1): e1012831 (22 p.) DOI: 10.1371/journal.ppat.1012831 IF 4.9 (2024)

JAWORSKA D., PAWŁOWSKA J., KOSTYRA E., PIOTROWSKA A., PŁECHA M., OSTROWSKI G., SYMONIUK E., HOPKINS D.L., SAWICKI K., PRZYBYLSKI W., Dry-aged beef quality with the addition of Mucor flavus – sensory, chemosensory and fatty acid analysis. Meat Science (2025) 220: 109691 (10 p.) DOI: 10.1016/j.meatsci.2024.109691 IF 6.1 (2024)

KAMIŃSKA J., KOCHAŃSKI A., A role of inflammation in Charcot–Marie–Tooth disorders - in a perspective of treatment? International Journal of Molecular Sciences (2025) 26(1): 15 (14 p.) DOI: 10.3390/ijms26010015 IF 4.9 (2024)

BOCHTLER M., How the technologies behind self-driving cars, social networks, ChatGPT, and DALL-E2 are changing structural biology. BioEssays (2025) 47(1): 2400155 (19 p.) DOI: 10.1002/bies.202400155 IF 2.7 (2024)

DRĄŻKOWSKA K., TOMECKI R., TUDEK A., Purification of enzymatically active Xrn1 for removal of non-capped mRNAs from In vitro transcription reactions and evaluation of mRNA decapping status In Vivo. Chapter 7 in: mRNA Decay: Methods and Protocols, Methods in Molecular Biology/ Ed. M. Wery, Humana Press, (2025) vol. 2863 [XIV, 423], ISBN 978-1-0716-4178-1, p. 81-105 DOI: 10.1007/978-1-0716-4176-7_7

KAMIŃSKA K., ŚWIDERSKA B., MALINOWSKA A., GRZESIAK M., Tandem mass tag-based proteomic analysis of granulosa and theca interna cells of the porcine ovarian follicle following in vitro treatment with vitamin D3 and insulin alone or in combination. Journal of Proteomics (2025) 310: 105318 (22 p.) DOI: 10.1016/j.jprot.2024.105318 IF 2.8 (2024)

KRUK M., LALOWSKI P., PŁECHA M., PONDER A., RUDZKA A., ZIELIŃSKA D., TRZĄSKOWSKA M., Prebiotic potential of spent brewery grain – In vitro study. Food Chemistry (2025) 463 (Part 2): 141254 (13 p.) DOI: 10.1016/j.foodchem.2024.141254 IF 9.8 (2024)

BOGUSŁAWSKA J., GRZANKA M., POPŁAWSKI P., ZARYCHTA-WIŚNIEWSKA W., BURDZIŃSKA A., HANUSEK K., KOSSOWSKA H., IWANICKA-NOWICKA R., BIAŁAS A., RYBICKA B., ADAMIOK-OSTROWSKA A., ŻYCKA-KRZESIŃSKA J., KOBLOWSKA M., PĄCZEK L., PIEKIEŁKO-WITKOWSKA A. Non-coding RNAs secreted by renal cancer include piR_004153 that promotes migration of mesenchymal stromal cells. Cell Communication and Signaling (2025) 23: 3 (13 p.) DOI: 10.1186/s12964-024-02001-1 IF 8.9 (2024)

ADAMCZYK J., POZIEMSKI J., SIEDLECKI P., ApisTox: a new benchmark dataset for the classification of small molecules toxicity on honey bees. Scientific Data (2025) 12: 5 (15 p.) DOI: 10.1038/s41597-024-04232-w IF 6.9 (2024)

GRELEWSKA-NOWOTKO K., ELHAG E.A., TUROWSKI T., Transcription kinetics in the coronavirus life cycle. Wiley Interdisciplinary Reviews-RNA (2025) 16 (1): e70000 (24 p.) DOI: 10.1002/wrna.70000 IF 4.8 (2024)

DESKUR A., AMBROŻKIEWICZ F., SAMBOROWSKA E., BŁOGOWSKI W., SULIKOWSKI T., BIAŁEK A., ZAWADA I., DĄBKOWSKI K., MITRUS J., KARCZMARSKI J., CYBULA P., PAZIEWSKA A., STARZYŃSKA T., Plasma bacterial metabolites in Crohn’s disease pathogenesis and complications. Nutrients (2025) 17: 74 (19 p.) DOI: 10.3390/nu17010074 IF 5.0 (2024)

IWAŃSKA O., LATOCH P., KOVALENKO M., LICHOCKA M., HOŁÓWKA J., SERWA R., GRZYBOWSKA A., ZAKRZEWSKA-CZERWIŃSKA J., STAROSTA A.L., Ribosomes translocation into the spore of Bacillus subtilis is highly organised and requires peptidoglycan rearrangements. Nature Communications (2025) 16: 354 (11 p.) DOI: 10.1038/s41467-024-55196-9 IF 15.7 (2024)

JURKIEWICZ A., GRACZYK D., SZCZĘSNY R.J., Production of fully capped mRNA for transfection into mammalian cells: a protocol for enzymatic degradation of uncapped transcripts after in vitro mRNA synthesis. Chapter 8 in: mRNA Decay. Methods and Protocols, Ed. by M. Wery, ISBN 978-1-0716-4175-0, Methods in Molecular Biology, Springer (2025) 2863 [XIV, 423] p. 107-115 DOI: 10.1007/978-1-0716-4176-7_8

PILARCZYK-ŻUREK M., BUDZIASZEK J., NANDAGOPAL K., KURYŁEK A., KOZIŃSKA A., DMOWSKI M., SITKIEWICZ I., KERN-ZDANOWICZ I., KOZIEŁ J., Streptococcus anginosus orchestrates antibacterial potential of NETs facilitating survival of accompanying pathogens. Microbiological Research (2025) 290: 127959 (13 p.) DOI: 10.1016/j.micres.2024.127959 IF 6.9 (2024)

DYLEWSKA M., DĄBROWSKA I., ĆWIEK K., PADOŁ K., MIELECKI D., SOKOŁOWSKA B., POZNAŃSKI J., MACIEJEWSKA A.M., AlkA glycosylase and AlkB dioxygenase constitute an effective protective system for endogenously arising acrolein. Journal of Molecular Biology (2025) 437(2): 168912 (13 p.) DOI: 10.1016/j.jmb.2024.168912 IF 4.5 (2024)