Publikacje - Instytut Biochemii i Biofizyki Polskiej Akademii Nauk

CIEŚLIK M., BAGIŃSKA N., JOŃCZYK-MATYSIAK E., WĘGRZYN A., WĘGRZYN G., GÓRSKI A., Temperate bacteriophages - the powerful indirect modulators of eukaryotic cells and immune functions. Viruses (2021) 13(6): 1013 (17p.) DOI: 10.3390/v13061013 IF 5.818 (2021)

TRUSZEWSKA A., WIRKOWSKA A., GALA K., TRUSZEWSKI P., KRZEMIEŃ-OJAK Ł., MUCHA K., PĄCZEK L., FORONCEWICZ B., EBV load is associated with cfDNA fragmentation and renal damage in SLE patients. Lupus (2021) 30(8): 1214-1225 DOI: 10.1177/09612033211010339 IF 2.858 (2021)

FRĄCZYK T., Phosphorylation impacts Cu(II) binding by ATCUN motifs. Inorganic Chemistry (2021) 60(12): 8447-8450 DOI: 10.1021/acs.inorgchem.1c00939 IF 5.436 (2021)

BOCHTLER M., Distinction between self and non-self in restriction modification: The mysterious case of type IIL enzymes. Structure (2021) 29(6): 512-514 DOI: 10.1016/j.str.2021.05.007 IF 5.871 (2021)

MOSZCZUK B., KIRYLUK K., PĄCZEK L., MUCHA K., Membranous nephropathy: from research bench to personalized care. Journal of Clinical Medicine (2021)10(6): 1205 DOI: 10.3390/jcm10061205 IF 4.964 (2021)

WINIEWSKA-SZAJEWSKA M., MACIEJEWSKA A.M., SPEINA E., POZNAŃSKI J., PAPROCKI D., Synthesis of novel halogenated heterocycles based on o‐phenylenediamine and their interactions with the catalytic subunit of protein kinase ck2. Molecules (2021) 26(11): 3136 DOI: 10.3390/molecules26113163 IF 4.927 (2021)

NARCZYK M., MIODUSZEWSKI Ł., OKSIEJUK A., WINIEWSKA-SZAJEWSKA M., WIELGUS-KUTROWSKA B., GOJDŹ A., CIEŚLA J., BZOWSKA A., Single tryptophan Y160W mutant of homooligomeric E. coli purine nucleoside phosphorylase implies that dimers forming the hexamer are functionally not equivalent. Scientific Reports (2021) 11: 11144 DOI: 10.1038/s41598-021-90472-4 IF 4.996 (2021)

KAMIŃSKA J., STOPIŃSKI M., MUCHA K., PAC M., GOŁĘBIOWSKI M., NIEWCZAS M., PĄCZEK L., FORONCEWICZ B., Circulating osteoprotegerin in chronic kidney disease and all-cause mortality. International Journal of General Medicine (2021) 14: 2413–2420 DOI: 10.2147/IJGM.S302251 IF 2.145 (2021)

LOPEZ-MENDEZ B., BARON B., BRAUTIGAM C.A., JOWITT T.A., KNAUER S.H., UEBEL S., WILLIAMS M.A., SEDIVY A.,ABIAN O., ABREU C., ADAMCZYK M., BAL W., ET AL. Reproducibility and accuracy of microscale thermophoresis in the NanoTemper Monolith: a multi laboratory benchmark study. European Biophysics Journal with Biophysical Letters (2021) 50(3-4): 411-427 DOI: 10.1007/s00249-021-01532-6 IF 2.095 (2021)

SZOPIŃSKA M., LUCZKIEWICZ A., JANKOWSKA K., FUDALA-KSIĄŻEK S., POTAPOWICZ J., KALINOWSKA A., BIALIK R.J., CHMIEL S., POLKOWSKA Ż., First evaluation of wastewater discharge influence on marine water contamination in the vicinity of Arctowski Station (Maritime Antarctica). Science of the Total Environment (2021) 789: 147912 DOI: 10.1016/j.scitotenv.2021.147912 IF 10.753 (2021)

JOACHIMIAK E., OSINKA A., FARAHAT H., ŚWIDERSKA B., SITKIEWICZ E., POPRZECZKO M., FABCZAK H., WŁOGA D., Composition and function of the C1b/C1f region in the ciliary central apparatus. Scientific Reports (2021) 11(1): 11760 DOI: 10.1038/s41598-021-90996-9 IF 4.996 (2021)

MALABARBA J., MEENTS A.K., REICHELT M., SCHOLZ S.S., PEITER E., RACHOWKA J., KONOPKA-POSTUPOLSKA D., WILKINS K.A., DAVIES J.M., OELMŰLLER R., MITHÖFER A., ANNEXIN1 mediates calcium-dependent systemic defense in Arabidopsis plants upon herbivory and wounding. New Phytologist (2021) 231(1): 243-254 DOI: 10.1111/nph.17277 IF 10.323 (2021)

DETMAN A., BUCHA M., TREU L., CHOJNACKA A., PLEŚNIAK Ł., SALAMON A., ŁUPIKASZA E., GROMADKA R., GAWOR J., GROMADKA A., DRZEWICKI W., JAKUBIAK M., JANIGA M., MATYASIK I., BŁASZCZYK M.K., ORION-JĘDRYSEK M., CAMPANARO S., SIKORA A., Evaluation of acidogenesis products' effect on biogas production performed with metagenomics and isotopic approaches. Biotechnology for Biofuels (2021) 14(1): 125 DOI: 10.1186/s13068-021-01968-0 IF 7.670 (2021)

FIGURA M., SITKIEWICZ E., ŚWIDERSKA B., MILANOWSKI Ł., SZLUFIK S., KOZIOROWSKI D., FRIEDMAN A., Proteomic profile of saliva in Parkinson's disease patients: a proof of concept study. Brain Sciences (2021) 11(5): 661 DOI: 10.3390/brainsci11050661 IF 3.333 (2021)

SZULC N., BURDUKIEWICZ M., GĄSIOR-GŁOGOWSKA M., WOJCIECHOWSKI J.W., CHILIMONIUK J., MACKIEWICZ P., SNEIDERIS T., SMIRNOVAS V., KOTULSKA M., Bioinformatics methods for identification of amyloidogenic peptides show robustness to misannotated training data. Scientific Reports (2021) 11(1): 8934 DOI: 10.1038/s41598-021-86530-6 IF 4.996 (2021)

TUROWSKI T.W., BOGUTA M., Specific features of RNA polymerases I and III: structure and assembly. Frontiers in Molecular Biosciences (2021) 8: 680090 DOI: 10.3389/fmolb.2021.680090 IF 6.113 (2021)

SHAHMORADI GHAHE S., KOSICKI K., WOJEWÓDZKA M., MAJCHRZAK B.A., FOGTMAN A., IWANICKA-NOWICKA R., CIUBA A., KOBLOWSKA M., KRUSZEWSKI M., TUDEK B., SPEINA E., Increased DNA repair capacity augments resistance of glioblastoma cells to photodynamic therapy. DNA Repair (2021) 104: 103136 DOI: 10.1016/j.dnarep.2021.103136 IF 4.354 (2021)

KLIM J., ZIELENKIEWICZ U., SKONECZNY M., SKONECZNA A., KURLANDZKA A., KACZANOWSKI S., Genetic interaction network has a very limited impact on the evolutionary trajectories in continuous culture-grown populations of yeast. BMC Ecology and Evolution (2021) 21(1): 99 DOI:10.1186/s12862-021-01830-9 IF - (2021)

ORŁOWSKA M., STECZKIEWICZ K., MUSZEWSKA A., Utilization of cobalamin is ubiquitous in early-branching fungal phyla. Genome Biology and Evolution (2021) 13(4): evab043 DOI: 10.1093/gbe/evab043 IF 4.065 (2021)

SZULC N., GĄSIOR-GŁOGOWSKA M., WOJCIECHOWSKI J.W., SZEFCZYK M., ŻAK A.M., BURDUKIEWICZ M., KOTULSKA M., Variability of amyloid propensity in imperfect repeats of CsgA protein of Salmonella enterica and Escherichia coli. International Journal of Molecular Sciences (2021) 22(10): 5127 DOI: 10.3390/ijms22105127 IF 6.208 (2021)

GRABOWSKI Ł., ŁEPEK K., STASIŁOJĆ M., KOSZNIK-KWAŚNICKA K., ZDROJEWSKA K., MACIĄG-DORSZYŃSKA M., WĘGRZYN G., WĘGRZYN A., Bacteriophage-encoded enzymes destroying bacterial cell membranes and walls, and their potential use as antimicrobial agents. Microbiological Research (2021) 248: 126746 DOI: 10.1016/j.micres.2021.126746 IF 5.070 (2021)

HARAŃCZYK H., STRZAŁKA K., KUBAT K., ANDRZEJOWSKA A., OLECH M., JAKUBIEC D., KIJAK P., PALFNER G., CASANOVA-KATNY A., A comparative analysis of gaseous phase hydration properties of two lichenized fungi: Niebla tigrina (Follman) Rundel & Bowler from Atacama Desert and Umbilicaria antarctica Frey & I. M. Lamb from Robert Island, Southern Shetlands Archipelago, maritime Antarctica. Extremophiles (2021) 25(3): 267-283 DOI: 10.1007/s00792-021-01227-y IF 3.035 (2021)

NOWAK K.P., SOBOLEWSKA-RUTA A., JAGIEŁŁO A., BIERCZYŃSKA-KRZYSIK A., KIERYŁ P., WAWRZYNIAK P., Molecular and functional characterization of MobK protein—a novel-type relaxase involved in mobilization for conjugational transfer of Klebsiella pneumoniae plasmid pIGRK. International Journal of Molecular Sciences (2021) 22(10): 5152 DOI: 10.3390/ijms22105152 IF 6.208 (2021)

SU X., DAUTANT A., RAK M., GODARD F., EZKURDIA N., BOUHIER M., BIETENHADER M., MUELLER D.M., KUCHARCZYK R., DI RAGO J.-P., TRIBOUILLARD-TANVIER D., The pathogenic m.8993T>G mutation in mitochondrial ATP6 gene prevents proton release from the subunit c-ring rotor of ATP synthase. Human Molecular Genetics (2021) 30(5): 381-392 DOI: 10.1093/hmg/ddab043 IF 5.121 (2021)

PERŁA-KAJAN J., MALINOWSKA A., ZIMNY J., CYSEWSKI D., SUSZYŃSKA-ZAJCZYK J., JAKUBOWSKI H., Proteome-wide analysis of protein lysine N-homocysteinylation in Saccharomyces cerevisiae. Journal of Proteome Research (2021) 20(5): 2458-2476 DOI: 10.1021/acs.jproteome.0c00937 IF 5.370 (2021)

KOTECKA K., KAWAŁEK A., KOBYŁECKI K., BARTOSIK A.A., The AraC-type transcriptional regulator GliR (PA3027) activates genes of glycerolipid metabolism in Pseudomonas aeruginosa. International Journal of Molecular Sciences (2021) 22(10): 5066 DOI: 10.3390/ijms22105066 IF 6.208 (2021)

SIRKO A., WAWRZYŃSKA A., BRZYWCZY J., SIEŃKO M., Control of ABA signaling and crosstalk with other hormones by the selective degradation of pathway components. International Journal of Molecular Sciences (2021) 22(9): 4638 DOI: 10.3390/ijms22094638 IF 6.208 (2021)

ŁOBOCKA M., DĄBROWSKA K., GÓRSKI A., Engineered bacteriophage therapeutics: rationale, challenges and future. BioDrugs (2021) 35(3): 255-280 DOI: 10.1007/s40259-021-00480-z IF 7.744 (2021)

MITURA M., LEWICKA E., GODZISZEWSKA J., ADAMCZYK M., JAGURA-BURDZY G., Alpha-helical protein KfrC acts as a switch between the lateral and vertical modes of dissemination of broad-host-range RA3 plasmid from IncU (IncP-6) incompatibility group. International Journal of Molecular Sciences (2021) 22(9): 4880 DOI: 10.3390/ijms22094880 IF 6.208 (2021)

MARCINKOWSKI M., PILŻYS T., GARBICZ D., PIWOWARSKI J., MIELECKI D., NOWACZYK G., TAUBE M., GIELNIK M., KOZAK M., WINIEWSKA-SZAJEWSKA M., SZOŁAJSKA E., DĘBSKI J., MACIEJEWSKA A.M., PRZYGOŃSKA K., FERENC K., GRZESIUK E., POZNAŃSKI J., Effect of posttranslational modifications on the structure and activity of FTO demethylase. International Journal of Molecular Sciences (2021) 22(9): 4512 DOI: 10.3390/ijms22094512 IF 6.208 (2021)

STECZKIEWICZ K., PRESTEL E., BIDNENKO E., SZCZEPANKOWSKA A.K., Expanding diversity of Firmicutes single-strand annealing proteins: a putative role of bacteriophage-host arms race. Frontiers in Microbiology (2021) 12: 644622 DOI: 10.3389/fmicb.2021.644622 IF 6.064 (2021)

GEWARTOWSKA O., ARANAZ-NOVALICHES G., KRAWCZYK P.S., MROCZEK S., KUSIO-KOBIAŁKA M., TARKOWSKI B., SPOUTIL F., BENADA O., KOFROŇOVÁ O., SZWEDZIAK P., CYSEWSKI D., GRUCHOTA J., SZPILA M., CHLEBOWSKI A., SEDLACEK R., PROCHAZKA J., DZIEMBOWSKI A., Cytoplasmic polyadenylation by TENT5A is required for proper bone formation. Cell Reports (2021) 35(3): 109015 DOI: 10.1016/j.celrep.2021.109015 IF 9.995 (2021)

SKRZYPEK T., FERENC K., SIKORA A., GRZESIUK E., Microbial life in the gut. Chapter 7 in: Atlas of the Pig Gut. Research and techniques from birth to adulthood, Academic Press. Ed. R. Zabielski, T. Skrzypek; ISBN 978-0-12-818958-0, 2021, p. 119-125 DOI: 10.1016/B978-0-12-818958-0.00007-7

KERN-ZDANOWICZ I., pCTX-M3—structure, function and evolution of a multi-resistance conjugative plasmid of a broad recipient range. International Journal of Molecular Sciences (2021) 22(9): 4606 DOI: 10.3390/ijms22094606 IF 6.208 (2021)

MAZUR M., WOJCIECHOWSKA D., SITKIEWICZ E., MALINOWSKA A., ŚWIDERSKA B., KMITA H., WOJTKOWSKA M., Mitochondrial processes during early development of Dictyostelium discoideum: from bioenergetic to proteomic studies. Genes (2021) 12(5): 638 DOI: 10.3390/genes12050638 IF 4.141 (2021)

KARSKA N., GRAUL M., SIKORSKA E., ŚLUSARZ M.J., ZHUKOV I., KASPRZYKOWSKI F., KUBIŚ A., LIPIŃSKA A.D., RODZIEWICZ-MOTOWIDŁO S., Investigation of the effects of primary structure modifications within the RRE motif on the conformation of synthetic bovine herpesvirus 1-encoded UL49.5 protein fragments. Chemistry and Biodiversity (2021) 18(2): e2000883 DOI: 10.1002/cbdv.202000883 IF 2.745 (2021)

FATALSKA A., STEPINAC E., RICHTER M.M., KOVACS L., PIETRAS Z., PUCHINGER M., DONG G., DADLEZ M., GLOVER D.M., The dimeric Golgi protein Gorab binds to Sas6 as a monomer to mediate centriole duplication. eLife (2021) 10: e57241 DOI: 10.7554/eLife.57241 IF 8.713 (2021)

GRZYBEK M., ANTOLOVÁ D., TOŁKACZ K., ALSARRAF M., BEHNKE-BOROWCZYK J., NOWICKA J., PALEOLOG J., BIERNAT B., BEHNKE J.M., BAJER A., Seroprevalence of Toxoplasma gondii among sylvatic rodents in Poland. Animals (2021) 11(4): 1048 DOI: 10.3390/ani11041048 IF 3.231 (2021)

FRĄCZYK T., Cu(II)-binding N-terminal sequences of human proteins. Chemistry and Biodiversity (2021) 18(4): e2100043 DOI: 10.1002/cbdv.202100043 IF 2.745 (2021)

STEFANIAK E., ATRIAN-BLASCO E., GOCH W., SABATER L., HUREAU CH., BAL W., The aggregation pattern of Aß_1–40 is altered by the presence of N-truncated Aß_4–40 and/or Cu^II in a similar way through ionic interactions. Chemistry-A European Journal (2021) 27(8): 2798-2809 DOI: 10.1002/chem.202004484 IF 5.020 (2021)

GASANOV E.V., JĘDRYCHOWSKA J., PASTOR M., WIWEGER M., METHNER A., KORZH V.P., An improved method for precise genome editing in zebrafish using CRISPR-Cas9 technique. Molecular Biology Reports (2021) 48(2): 1951-1957 DOI: 10.1007/s11033-020-06125-8 IF 2.742 (2021)

PAWŁOWSKI P.H., Charged amino acids may promote coronavirus SARS-CoV-2 fusion with the host cell. AIMS Biophysics (2021) 8(1): 111-120 DOI: 10.3934/biophy.2021008 IF - (2021)

KOTECKA K., KAWAŁEK A., KOBYŁECKI K., BARTOSIK A.A., The MarR-type regulator PA3458 is involved in osmoadaptation control in Pseudomonas aeruginosa. International Journal of Molecular Sciences (2021) 22(8): 3982 DOI: 10.3390/ijms22083982 IF 6.208 (2021)

KLUEBSOONGNOEN J., PANYIM S., SARNOWSKI T.J., UDOMKIT A., Retinoid X receptor modulates vitellogenin gene expression in black tiger shrimp, Penaeus monodon. Comparative Biochemistry and Physiology. Part A (2021) 254: 110877 DOI:10.1016/j.cbpa.2020.110877 IF 2.888 (2021)

GRUCA A., ZIEMSKA-LEGIĘCKA J., JARNOT P., SARNOWSKA E., SARNOWSKI T.J., GRYNBERG M., Common low complexity regions for SARS‑CoV‑2 and human proteomes as potential multidirectional risk factor in vaccine development. BMC Bioinformatics (2021) 22(1): 182 DOI:10.1186/s12859-021-04017-7 IF 3.328 (2021)

GALERA H., RUDAK A., PIELECH M., ZNÓJ A., CHWEDORZEWSKA K.J., WÓDKIEWICZ M., Influence of the population spatial structure on seed rain distribution of an invasive plant under harsh environment. Polar Biology (2021) 44(3): 587-591 DOI: 10.1007/s00300-021-02808-5 IF 2.198 (2021)

VERSCHAFFELT, P., VAN DEN BOSSCHE T., GABRIEL W., BURDUKIEWICZ M., SOGGIU A., MARTENS L., RENARD B.Y., SCHIEBENHOEFER H., MESUERE B., MegaGO: a fast yet powerful approach to assess functional gene ontology similarity across meta-omics data sets. Journal of Proteome Research (2021) 20(4): 2083-2088 DOI:10.1021/acs.jproteome.0c00926 IF 5.370 (2021)

ZNÓJ A., GRZESIAK J., GAWOR J., GROMADKA R., CHWEDORZEWSKA K.J., Bacterial communities associated with Poa annua roots in central european (Poland) and Antarctic settings (King George Island). Microorganisms (2021) 9(4): 811 DOI: 10.3390/microorganisms9040811 IF 4.926 (2021)

KLIM J., ZIELENKIEWICZ U., KURLANDZKA A., KACZANOWSKI S., The adaptive landscape of genetic interaction network has no impact on yeast adaptive evolution. Frontiers in Genetics (2021) 12: 640501 DOI: 10.3389/fgene.2021.640501 IF 4.772 (2021)

NIEMCZYK M., GŁADKI A., GROMADKA A., ZIELENKIEWICZ P., PĄCZEK L., Potential role of plant microRNAs in the pathogenesis of autosomal dominant polycystic kidney disease: an in silico study. Polish Archives of Internal Medicine (2021) 131(3): 306-308 DOI: 10.20452/pamw.15804 IF 5.218 (2021)